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Junjie Zhu
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Enhancing conformational sampling for intrinsically disordered and ordered proteins by Variational autoencoder
JJ Zhu, NJ Zhang, T Wei, HF Chen
International Journal of Molecular Sciences 24 (8), 6896, 2023
92023
Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling
J Zhu, Z Li, H Tong, Z Lu, N Zhang, T Wei, HF Chen
Briefings in Bioinformatics 25 (1), bbad429, 2024
62024
Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins via Fine-tuned Diffusion Models
J Zhu, Z Li, Z Zheng, B Zhang, B Zhong, J Bai, T Wang, T Wei, J Yang, ...
bioRxiv, 2024.05. 05.592611, 2024
22024
Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins via Fine-tuned Diffusion Models
H Chen, J Zhu, Z Li, Z Zheng, B Zhang, B Zhong, J Bai, T Wang, T Wei, ...
2024
Excited–Ground-State Transition of the RNA Strand Slippage Mechanism Captured by the Base-Specific Force Field
Z Li, G Song, J Zhu, J Mu, Y Sun, X Hong, T Choi, X Cui, HF Chen
Journal of Chemical Theory and Computation, 2024
2024
Scaffold-Lab: Critical Evaluation and Ranking of Protein Backbone Generation Methods in A Unified Framework
Z Zheng, B Zhang, B Zhong, K Liu, Z Li, J Zhu, J Yu, T Wei, HF Chen
bioRxiv, 2024.02. 10.579743, 2024
2024
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