Enhancing conformational sampling for intrinsically disordered and ordered proteins by Variational autoencoder JJ Zhu, NJ Zhang, T Wei, HF Chen International Journal of Molecular Sciences 24 (8), 6896, 2023 | 9 | 2023 |
Phanto-IDP: compact model for precise intrinsically disordered protein backbone generation and enhanced sampling J Zhu, Z Li, H Tong, Z Lu, N Zhang, T Wei, HF Chen Briefings in Bioinformatics 25 (1), bbad429, 2024 | 6 | 2024 |
Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins via Fine-tuned Diffusion Models J Zhu, Z Li, Z Zheng, B Zhang, B Zhong, J Bai, T Wang, T Wei, J Yang, ... bioRxiv, 2024.05. 05.592611, 2024 | 2 | 2024 |
Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins via Fine-tuned Diffusion Models H Chen, J Zhu, Z Li, Z Zheng, B Zhang, B Zhong, J Bai, T Wang, T Wei, ... | | 2024 |
Excited–Ground-State Transition of the RNA Strand Slippage Mechanism Captured by the Base-Specific Force Field Z Li, G Song, J Zhu, J Mu, Y Sun, X Hong, T Choi, X Cui, HF Chen Journal of Chemical Theory and Computation, 2024 | | 2024 |
Scaffold-Lab: Critical Evaluation and Ranking of Protein Backbone Generation Methods in A Unified Framework Z Zheng, B Zhang, B Zhong, K Liu, Z Li, J Zhu, J Yu, T Wei, HF Chen bioRxiv, 2024.02. 10.579743, 2024 | | 2024 |