| Adaptive evolution of virulence and persistence in carbapenem-resistant Klebsiella pneumoniae CM Ernst, JR Braxton, CA Rodriguez-Osorio, AP Zagieboylo, L Li, ... Nature medicine 26 (5), 705-711, 2020 | 190 | 2020 |
| Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination RP Bhattacharyya, N Bandyopadhyay, P Ma, SS Son, J Liu, LL He, L Wu, ... Nature medicine 25 (12), 1858-1864, 2019 | 108 | 2019 |
| Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremia L Bernard-Raichon, M Venzon, J Klein, JE Axelrad, C Zhang, AP Sullivan, ... Nature communications 13 (1), 5926, 2022 | 103 | 2022 |
| Synergistic activity of colistin-containing combinations against colistin-resistant Enterobacteriaceae T Brennan-Krohn, A Pironti, JE Kirby Antimicrobial agents and chemotherapy 62 (10), 10.1128/aac. 00873-18, 2018 | 102 | 2018 |
| HIV-2EU: supporting standardized HIV-2 drug resistance interpretation in Europe C Charpentier, R Camacho, J Ruelle, R Kaiser, J Eberle, L Gürtler, ... Clinical infectious diseases 56 (11), 1654-1658, 2013 | 63* | 2013 |
| HIV-GRADE: a publicly available, rules-based drug resistance interpretation algorithm integrating bioinformatic knowledge M Obermeier, A Pironti, T Berg, P Braun, M Däumer, J Eberle, R Ehret, ... Intervirology 55 (2), 102-107, 2012 | 48 | 2012 |
| Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation M Venzon, L Bernard-Raichon, J Klein, JE Axelrad, C Zhang, GA Hussey, ... Biorxiv, 2021 | 47 | 2021 |
| geno2pheno [ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data M Döring, J Büch, G Friedrich, A Pironti, P Kalaghatgi, E Knops, E Heger, ... Nucleic acids research 46 (W1), W271-W277, 2018 | 46 | 2018 |
| Metabolic flux analysis gives an insight on verapamil induced changes in central metabolism of HL-1 cells A Strigun, F Noor, A Pironti, J Niklas, TH Yang, E Heinzle Journal of biotechnology 155 (3), 299-307, 2011 | 33 | 2011 |
| Longitudinal gut microbiome analyses and blooms of pathogenic strains during lupus disease flares DF Azzouz, Z Chen, PM Izmirly, LA Chen, Z Li, C Zhang, D Mieles, ... Annals of the rheumatic diseases 82 (10), 1315-1327, 2023 | 21 | 2023 |
| Genetic determinants facilitating the evolution of resistance to carbapenem antibiotics P Ma, LL He, A Pironti, HH Laibinis, CM Ernst, AL Manson, ... Elife 10, e67310, 2021 | 19 | 2021 |
| SynerClust: a highly scalable, synteny-aware orthologue clustering tool CH Georgescu, AL Manson, AD Griggs, CA Desjardins, A Pironti, ... Microbial genomics 4 (11), e000231, 2018 | 18 | 2018 |
| Parameters influencing baseline HIV-1 genotypic tropism testing related to clinical outcome in patients on maraviroc S Sierra, JN Dybowski, A Pironti, D Heider, L Güney, A Thielen, S Reuter, ... PloS one 10 (5), e0125502, 2015 | 16 | 2015 |
| Antimicrobial overproduction sustains intestinal inflammation by inhibiting Enterococcus colonization KK Jang, T Heaney, M London, Y Ding, G Putzel, F Yeung, D Ercelen, ... Cell Host & Microbe 31 (9), 1450-1468. e8, 2023 | 12 | 2023 |
| Pathogen species is associated with mortality in nosocomial bloodstream infection in patients with COVID-19 J Gago, TD Filardo, S Conderino, SJ Magaziner, Y Dubrovskaya, ... Open forum infectious diseases 9 (6), ofac083, 2022 | 12 | 2022 |
| Using drug exposure for predicting drug resistance–a data-driven genotypic interpretation tool A Pironti, N Pfeifer, H Walter, BEO Jensen, M Zazzi, P Gomes, R Kaiser, ... PLoS One 12 (4), e0174992, 2017 | 12 | 2017 |
| Clostridia isolated from helminth-colonized humans promote the life cycle of Trichuris species S Sargsian, Z Chen, SC Lee, A Robertson, RS Thur, J Sproch, JC Devlin, ... Cell reports 41 (9), 2022 | 11 | 2022 |
| Development of a phenotypic susceptibility assay for HIV-1 integrase inhibitors E Heger, AA Theis, K Remmel, H Walter, A Pironti, E Knops, ... Journal of virological methods 238, 29-37, 2016 | 11 | 2016 |
| Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation. bioRxiv 2022 M Venzon, L Bernard-Raichon, J Klein, JE Axelrad, C Zhang, GA Hussey, ... Google Scholar, 0 | 8 | |
| Capsular polysaccharide is essential for the virulence of the antimicrobial-resistant pathogen Enterobacter hormaechei A St. John, AI Perault, SI Giacometti, AG Sommerfield, AL DuMont, ... Mbio 14 (2), e02590-22, 2023 | 7 | 2023 |
