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Pei-Chen Peng
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ChatGPT and large language models in academia: opportunities and challenges
JG Meyer, RJ Urbanowicz, PCN Martin, K O’Connor, R Li, PC Peng, ...
BioData Mining 16 (1), 20, 2023
2392023
Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity
P Khoueiry, C Girardot, L Ciglar, PC Peng, EH Gustafson, S Sinha, ...
Elife 6, e28440, 2017
472017
Comparison of feature selection methods for cross-laboratory microarray analysis
HC Liu, PC Peng, TC Hsieh, TC Yeh, CJ Lin, CY Chen, JY Hou, LY Shih, ...
IEEE/ACM transactions on computational biology and bioinformatics 10 (3 …, 2013
332013
The Role of Chromatin Accessibility in cis-Regulatory Evolution
PC Peng, P Khoueiry, C Girardot, JP Reddington, DA Garfield, ...
Genome biology and evolution 11 (7), 1813-1828, 2019
222019
Ovarian cancer risk variants are enriched in histotype-specific enhancers and disrupt transcription factor binding sites
MR Jones, PC Peng, SG Coetzee, J Tyrer, ALP Reyes, RI Corona, ...
The American Journal of Human Genetics 107 (4), 622-635, 2020
212020
Quantitative modeling of gene expression using DNA shape features of binding sites
PC Peng, S Sinha
Nucleic acids research 44 (13), e120-e120, 2016
182016
Incorporating chromatin accessibility data into sequence-to-expression modeling
PC Peng, MAH Samee, S Sinha
Biophysical journal 108 (5), 1257-1267, 2015
132015
DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers
N Gull, MR Jones, PC Peng, SG Coetzee, TC Silva, JT Plummer, ...
Journal of Experimental & Clinical Cancer Research 41 (1), 232, 2022
122022
Copy number variants are ovarian cancer risk alleles at known and novel risk loci
AA DeVries, J Dennis, JP Tyrer, PC Peng, SG Coetzee, AL Reyes, ...
JNCI: Journal of the National Cancer Institute 114 (11), 1533-1544, 2022
72022
Integrative multi-omics analyses to identify the genetic and functional mechanisms underlying ovarian cancer risk regions
EO Dareng, SG Coetzee, JP Tyrer, PC Peng, W Rosenow, S Chen, ...
The American Journal of Human Genetics 111 (6), 1061-1083, 2024
12024
Ninth International Symposium on Hereditary Breast and Ovarian Cancer
N Gull, M Diaz, K Dabke, PC Peng, J Lester, K Lawrenson, S Parker, ...
Familial Cancer 22, 345-397, 2023
12023
Improving on polygenic scores across complex traits using select and shrink with summary statistics
JP Tyrer, P Peng, AA DeVries, SA Gayther, MR Jones, PD Pharoah
medRxiv, 2022.09. 13.22278911, 2022
12022
Advancing LGBTQ+ inclusion in STEM education and AI research
E Wong, RJ Urbanowicz, TJ Bright, NP Tatonetti, YW Hsiao, X Huang, ...
Patterns 5 (6), 2024
2024
Exome sequencing identifies HELB as a novel susceptibility gene for non-mucinous, non-high-grade-serous epithelial ovarian cancer
EM Dicks, JP Tyrer, S Ezquina, M Jones, J Baierl, PC Peng, M Diaz, ...
medRxiv, 2024
2024
Homologous recombination repair deficiency, and not recurrence, determines mutational burden and clonal dynamics in high grade serous ovarian cancer
MA Diaz, N Gull, PC Peng, K Lawrenson, BJ Rimel, J Lester, B Karlan, ...
Cancer Research 84 (6_Supplement), 4336-4336, 2024
2024
Large-scale genome-wide association study of 398,238 women unveils seven novel loci associated with high-grade serous epithelial ovarian cancer risk
DR Barnes, JP Tyrer, J Dennis, G Leslie, MK Bolla, M Lush, AM Aeilts, ...
medRxiv, 2024
2024
Editorial viewpoints of scientific publishing for early-career research scientists
PC Peng, FT Coleman
BMC proceedings 18 (Suppl 1), 4, 2024
2024
Rare germline genetic variation in PAX8 transcription factor binding sites and susceptibility to epithelial ovarian cancer
SAM Ezquina, M Jones, E Dicks, A de Vries, PC Peng, K Lawrenson, ...
medRxiv, 2023.03. 22.23287587, 2023
2023
Quantifying the functional and evolutionary relationships among sequences, transcription factor binding and gene expression
PC Peng
University of Illinois at Urbana-Champaign, 2018
2018
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