ChatGPT and large language models in academia: opportunities and challenges JG Meyer, RJ Urbanowicz, PCN Martin, K O’Connor, R Li, PC Peng, ... BioData Mining 16 (1), 20, 2023 | 239 | 2023 |
Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity P Khoueiry, C Girardot, L Ciglar, PC Peng, EH Gustafson, S Sinha, ... Elife 6, e28440, 2017 | 47 | 2017 |
Comparison of feature selection methods for cross-laboratory microarray analysis HC Liu, PC Peng, TC Hsieh, TC Yeh, CJ Lin, CY Chen, JY Hou, LY Shih, ... IEEE/ACM transactions on computational biology and bioinformatics 10 (3 …, 2013 | 33 | 2013 |
The Role of Chromatin Accessibility in cis-Regulatory Evolution PC Peng, P Khoueiry, C Girardot, JP Reddington, DA Garfield, ... Genome biology and evolution 11 (7), 1813-1828, 2019 | 22 | 2019 |
Ovarian cancer risk variants are enriched in histotype-specific enhancers and disrupt transcription factor binding sites MR Jones, PC Peng, SG Coetzee, J Tyrer, ALP Reyes, RI Corona, ... The American Journal of Human Genetics 107 (4), 622-635, 2020 | 21 | 2020 |
Quantitative modeling of gene expression using DNA shape features of binding sites PC Peng, S Sinha Nucleic acids research 44 (13), e120-e120, 2016 | 18 | 2016 |
Incorporating chromatin accessibility data into sequence-to-expression modeling PC Peng, MAH Samee, S Sinha Biophysical journal 108 (5), 1257-1267, 2015 | 13 | 2015 |
DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers N Gull, MR Jones, PC Peng, SG Coetzee, TC Silva, JT Plummer, ... Journal of Experimental & Clinical Cancer Research 41 (1), 232, 2022 | 12 | 2022 |
Copy number variants are ovarian cancer risk alleles at known and novel risk loci AA DeVries, J Dennis, JP Tyrer, PC Peng, SG Coetzee, AL Reyes, ... JNCI: Journal of the National Cancer Institute 114 (11), 1533-1544, 2022 | 7 | 2022 |
Integrative multi-omics analyses to identify the genetic and functional mechanisms underlying ovarian cancer risk regions EO Dareng, SG Coetzee, JP Tyrer, PC Peng, W Rosenow, S Chen, ... The American Journal of Human Genetics 111 (6), 1061-1083, 2024 | 1 | 2024 |
Ninth International Symposium on Hereditary Breast and Ovarian Cancer N Gull, M Diaz, K Dabke, PC Peng, J Lester, K Lawrenson, S Parker, ... Familial Cancer 22, 345-397, 2023 | 1 | 2023 |
Improving on polygenic scores across complex traits using select and shrink with summary statistics JP Tyrer, P Peng, AA DeVries, SA Gayther, MR Jones, PD Pharoah medRxiv, 2022.09. 13.22278911, 2022 | 1 | 2022 |
Advancing LGBTQ+ inclusion in STEM education and AI research E Wong, RJ Urbanowicz, TJ Bright, NP Tatonetti, YW Hsiao, X Huang, ... Patterns 5 (6), 2024 | | 2024 |
Exome sequencing identifies HELB as a novel susceptibility gene for non-mucinous, non-high-grade-serous epithelial ovarian cancer EM Dicks, JP Tyrer, S Ezquina, M Jones, J Baierl, PC Peng, M Diaz, ... medRxiv, 2024 | | 2024 |
Homologous recombination repair deficiency, and not recurrence, determines mutational burden and clonal dynamics in high grade serous ovarian cancer MA Diaz, N Gull, PC Peng, K Lawrenson, BJ Rimel, J Lester, B Karlan, ... Cancer Research 84 (6_Supplement), 4336-4336, 2024 | | 2024 |
Large-scale genome-wide association study of 398,238 women unveils seven novel loci associated with high-grade serous epithelial ovarian cancer risk DR Barnes, JP Tyrer, J Dennis, G Leslie, MK Bolla, M Lush, AM Aeilts, ... medRxiv, 2024 | | 2024 |
Editorial viewpoints of scientific publishing for early-career research scientists PC Peng, FT Coleman BMC proceedings 18 (Suppl 1), 4, 2024 | | 2024 |
Rare germline genetic variation in PAX8 transcription factor binding sites and susceptibility to epithelial ovarian cancer SAM Ezquina, M Jones, E Dicks, A de Vries, PC Peng, K Lawrenson, ... medRxiv, 2023.03. 22.23287587, 2023 | | 2023 |
Quantifying the functional and evolutionary relationships among sequences, transcription factor binding and gene expression PC Peng University of Illinois at Urbana-Champaign, 2018 | | 2018 |