Transient Hoogsteen base pairs in canonical duplex DNA EN Nikolova, E Kim, AA Wise, PJ O’Brien, I Andricioaei, HM Al-Hashimi Nature 470 (7335), 498-502, 2011 | 386 | 2011 |
Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy JR Bothe, EN Nikolova, CD Eichhorn, J Chugh, AL Hansen, ... Nature methods 8 (11), 919-931, 2011 | 179 | 2011 |
A historical account of hoogsteen base‐pairs in duplex DNA EN Nikolova, H Zhou, FL Gottardo, HS Alvey, IJ Kimsey, HM Al‐Hashimi Biopolymers 99 (12), 955-968, 2013 | 138 | 2013 |
Extending the Range of Microsecond-to-Millisecond Chemical Exchange Detected in Labeled and Unlabeled Nucleic Acids by Selective Carbon R1ρ NMR … AL Hansen, EN Nikolova, A Casiano-Negroni, HM Al-Hashimi Journal of the American Chemical Society 131 (11), 3818-3819, 2009 | 131 | 2009 |
m1A and m1G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs H Zhou, IJ Kimsey, EN Nikolova, B Sathyamoorthy, G Grazioli, J McSally, ... Nature structural & molecular biology 23 (9), 803-810, 2016 | 126 | 2016 |
Characterizing the protonation state of cytosine in transient G· C Hoogsteen base pairs in duplex DNA EN Nikolova, GB Goh, CL Brooks III, HM Al-Hashimi Journal of the American Chemical Society 135 (18), 6766-6769, 2013 | 119 | 2013 |
Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics HS Alvey, FL Gottardo, EN Nikolova, HM Al-Hashimi Nature communications 5 (1), 4786, 2014 | 114 | 2014 |
Probing transient Hoogsteen hydrogen bonds in canonical duplex DNA using NMR relaxation dispersion and single-atom substitution EN Nikolova, FL Gottardo, HM Al-Hashimi Journal of the American Chemical Society 134 (8), 3667-3670, 2012 | 96 | 2012 |
Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis MJB Pereira, EN Nikolova, SL Hiley, D Jaikaran, RA Collins, NG Walter Journal of molecular biology 382 (2), 496-509, 2008 | 71 | 2008 |
Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13C Relaxation and Molecular Dynamics … EN Nikolova, GD Bascom, I Andricioaei, HM Al-Hashimi Biochemistry 51 (43), 8654-8664, 2012 | 55 | 2012 |
Modulating RNA alignment using directional dynamic kinks: application in determining an atomic-resolution ensemble for a hairpin using NMR residual dipolar couplings L Salmon, GM Giambasu, EN Nikolova, K Petzold, A Bhattacharya, ... Journal of the American Chemical Society 137 (40), 12954-12965, 2015 | 38 | 2015 |
CH··· O hydrogen bonds mediate highly specific recognition of methylated CpG sites by the zinc finger protein kaiso EN Nikolova, RL Stanfield, HJ Dyson, PE Wright Biochemistry 57 (14), 2109-2120, 2018 | 30 | 2018 |
Intrinsic dynamics of DNA–polymer complexes: a mechanism for DNA release LE Prevette, EN Nikolova, HM Al-Hashimi, MM Banaszak Holl Molecular pharmaceutics 9 (9), 2743-2749, 2012 | 28 | 2012 |
Thermodynamics of RNA melting, one base pair at a time EN Nikolova, HM Al-Hashimi RNA 16 (9), 1687-1691, 2010 | 21 | 2010 |
Preparation, resonance assignment, and preliminary dynamics characterization of residue specific 13C/15N-labeled elongated DNA for the study of sequence … EN Nikolova, HM Al-Hashimi Journal of biomolecular NMR 45, 9-16, 2009 | 21 | 2009 |
Guanine to inosine substitution leads to large increases in the population of a transient G· C hoogsteen base pair EN Nikolova, F Stull, HM Al-Hashimi Biochemistry 53 (46), 7145-7147, 2014 | 13 | 2014 |
A conformational switch in the zinc finger protein Kaiso mediates differential readout of specific and methylated DNA sequences EN Nikolova, RL Stanfield, HJ Dyson, PE Wright Biochemistry 59 (20), 1909-1926, 2020 | 8 | 2020 |
Structural plasticity of pioneer factor Sox2 and DNA bendability modulate nucleosome engagement and Sox2-Oct4 synergism FCM Gadea, EN Nikolova Journal of molecular biology 435 (2), 167916, 2023 | 7 | 2023 |
Nucleosome topology and DNA sequence modulate the engagement of pioneer factors SOX2 and OCT4 FCM Gadea, EN Nikolova BioRxiv, 2022.01. 18.476780, 2022 | 2 | 2022 |
The Double Helix in Motion: New Insights into Sequence-specific, Functional DNA Dynamics Using NMR Spectroscopy EN Nikolova University of Michigan, 2011 | 2 | 2011 |