| The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ... Nucleic acids research 34 (suppl 1), D446-D451, 2006 | 620 | 2006 |
| PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço BMC bioinformatics 13 (1), 1-10, 2012 | 571 | 2012 |
| The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ... Nucleic acids research 42 (D1), D161-D166, 2014 | 281 | 2014 |
| Logical modeling and dynamical analysis of cellular networks W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ... Frontiers in genetics 7, 94, 2016 | 242 | 2016 |
| YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ... Nucleic acids research 39 (suppl 1), D136-D140, 2011 | 236 | 2011 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 217 | 2020 |
| YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ... Nucleic acids research 36 (suppl 1), D132-D136, 2008 | 198 | 2008 |
| SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7 (1), 135, 2013 | 192 | 2013 |
| YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts PT Monteiro, J Oliveira, P Pais, M Antunes, M Palma, M Cavalheiro, ... Nucleic Acids Research 48 (D1), D642-D649, 2020 | 190 | 2020 |
| YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, M Palma, C Costa, CP Godinho, P Pais, ... Nucleic acids research 46 (D1), D348-D353, 2018 | 182 | 2018 |
| Temporal logic patterns for querying dynamic models of cellular interaction networks PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong Bioinformatics 24 (16), i227-i233, 2008 | 117 | 2008 |
| Model checking to assess T-helper cell plasticity W Abou-Jaoudé, PT Monteiro, A Naldi, M Grandclaudon, V Soumelis, ... Frontiers in bioengineering and biotechnology 2, 86, 2015 | 108 | 2015 |
| Cooperative development of logical modelling standards and tools with CoLoMoTo A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ... Bioinformatics 31 (7), 1154-1159, 2015 | 101* | 2015 |
| The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 680, 2018 | 93 | 2018 |
| Logical modeling and analysis of cellular regulatory networks with ginsim 3.0 A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 646, 2018 | 93 | 2018 |
| Efficient parameter search for qualitative models of regulatory networks using symbolic model checking G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong Bioinformatics 26 (18), i603-i610, 2010 | 86 | 2010 |
| Dynamical modeling and analysis of large cellular regulatory networks D Bérenguier, C Chaouiya, PT Monteiro, A Naldi, E Remy, D Thieffry, ... Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 2013 | 82 | 2013 |
| Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks G Batt, B Besson, H de Jong, E Dumas, J Geiselmann, R Monte, ... Bacterial Molecular Networks, 439-462, 2012 | 46 | 2012 |
| The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts PT Monteiro, P Pais, C Costa, S Manna, I Sá-Correia, MC Teixeira Nucleic acids research 45 (D1), D597-D603, 2017 | 45 | 2017 |
| Hybrid Epithelial–Mesenchymal Phenotypes Are Controlled by Microenvironmental Factors G Selvaggio, S Canato, A Pawar, PT Monteiro, PS Guerreiro, MM Brás, ... Cancer Research 80 (11), 2407-2420, 2020 | 44 | 2020 |
Claudine ChaouiyaI2M UMR 7373, Aix Marseille University (France)在 univ-amu.fr 的电子邮件经过验证
