| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 2012 | 16972 | 2012 |
| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 6195 | 2015 |
| Mapping and analysis of chromatin state dynamics in nine human cell types J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ... Nature 473 (7345), 43-49, 2011 | 3330 | 2011 |
| ChromHMM: automating chromatin-state discovery and characterization J Ernst, M Kellis Nature Methods 9 (3), 215-216, 2012 | 2504 | 2012 |
| STEM: a tool for the analysis of short time series gene expression data J Ernst, Z Bar-Joseph BMC bioinformatics 7, 1-11, 2006 | 1524 | 2006 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1472 | 2011 |
| Discovery and characterization of chromatin states for systematic annotation of the human genome J Ernst, M Kellis Nature Biotechnology 28, 817-825, 2010 | 1288 | 2010 |
| A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 1283 | 2011 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1087 | 2010 |
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ... Nature 471 (7339), 480-485, 2011 | 988 | 2011 |
| Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci PL De Jager, G Srivastava, K Lunnon, J Burgess, LC Schalkwyk, L Yu, ... Nature neuroscience 17 (9), 1156-1163, 2014 | 930 | 2014 |
| Chromatin-state discovery and genome annotation with ChromHMM J Ernst, M Kellis Nature protocols 12 (12), 2478-2492, 2017 | 713 | 2017 |
| Integrative annotation of chromatin elements from ENCODE data MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ... Nucleic acids research, gks1284, 2013 | 610 | 2013 |
| Chromosome conformation elucidates regulatory relationships in developing human brain H Won, L de La Torre-Ubieta, JL Stein, NN Parikshak, J Huang, ... Nature 538 (7626), 523-527, 2016 | 584 | 2016 |
| Clustering short time series gene expression data J Ernst, GJ Nau, Z Bar-Joseph Bioinformatics 21 (suppl_1), i159-i168, 2005 | 575 | 2005 |
| Cooperative binding of transcription factors orchestrates reprogramming C Chronis, P Fiziev, B Papp, S Butz, G Bonora, S Sabri, J Ernst, K Plath Cell 168 (3), 442-459. e20, 2017 | 519 | 2017 |
| Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity QK Beg, A Vazquez, J Ernst, MA de Menezes, Z Bar-Joseph, AL Barabási, ... Proceedings of the National Academy of Sciences 104 (31), 12663-12668, 2007 | 425 | 2007 |
| Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues J Ernst, M Kellis Nature biotechnology 33 (4), 364-376, 2015 | 396 | 2015 |
| Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells O Ram, A Goren, I Amit, N Shoresh, N Yosef, J Ernst, M Kellis, M Gymrek, ... Cell 147 (7), 1628-1639, 2011 | 396 | 2011 |
| Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay P Kheradpour, J Ernst, A Melnikov, P Rogov, L Wang, X Zhang, J Alston, ... Genome research 23 (5), 800-811, 2013 | 360 | 2013 |
Manolis KellisProfessor of Computer Science, MIT and Broad Institute在 mit.edu 的电子邮件经过验证
