| Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit Z Lang, Y Wang, K Tang, D Tang, T Datsenka, J Cheng, Y Zhang, ... Proceedings of the National Academy of Sciences 114 (22), E4511-E4519, 2017 | 407 | 2017 |
| Downregulation of RdDM during strawberry fruit ripening J Cheng, Q Niu, B Zhang, K Chen, R Yang, JK Zhu, Y Zhang, Z Lang Genome biology 19, 1-14, 2018 | 166 | 2018 |
| Arabidopsis flower and embryo developmental genes are repressed in seedlings by different combinations of polycomb group proteins in association with distinct sets of cis … H Wang, C Liu, J Cheng, J Liu, L Zhang, C He, WH Shen, H Jin, L Xu, ... PLoS genetics 12 (1), e1005771, 2016 | 139 | 2016 |
| Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS Y Liu, J Cheng, P Siejka-Zielińska, C Weldon, H Roberts, M Lopopolo, ... Genome biology 21, 1-9, 2020 | 82 | 2020 |
| Plant Regulomics: a data‐driven interface for retrieving upstream regulators from plant multi‐omics data X Ran, F Zhao, Y Wang, J Liu, Y Zhuang, L Ye, M Qi, J Cheng, Y Zhang The Plant Journal 101 (1), 237-248, 2020 | 75 | 2020 |
| Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in … X Chen, J Cheng, L Chen, G Zhang, H Huang, Y Zhang, L Xu Plant Physiology 170 (4), 2136-2145, 2016 | 70 | 2016 |
| Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution Y Liu, Z Hu, J Cheng, P Siejka-Zielińska, J Chen, M Inoue, AA Ahmed, ... Nature communications 12 (1), 618, 2021 | 61 | 2021 |
| Homology-mediated inter-chromosomal interactions in hexaploid wheat lead to specific subgenome territories following polyploidization and introgression J Jia, Y Xie, J Cheng, C Kong, M Wang, L Gao, F Zhao, J Guo, K Wang, ... Genome Biology 22, 1-21, 2021 | 50 | 2021 |
| Cell-free DNA TAPS provides multimodal information for early cancer detection P Siejka-Zielińska, J Cheng, F Jackson, Y Liu, Z Soonawalla, S Reddy, ... Science advances 7 (36), eabh0534, 2021 | 50 | 2021 |
| Polycomb repressive complex 2 attenuates ABA‐induced senescence in Arabidopsis C Liu, J Cheng, Y Zhuang, L Ye, Z Li, Y Wang, M Qi, L Xu, Y Zhang The Plant Journal 97 (2), 368-377, 2019 | 33 | 2019 |
| Modular oxidation of cytosine modifications and their application in direct and quantitative sequencing of 5-hydroxymethylcytosine H Xu, J Chen, J Cheng, L Kong, X Chen, M Inoue, Y Liu, S Kriaucionis, ... Journal of the American Chemical Society 145 (13), 7095-7100, 2023 | 17 | 2023 |
| Whole-genome long-read TAPS deciphers DNA methylation patterns at base resolution using PacBio SMRT sequencing technology J Chen, J Cheng, X Chen, M Inoue, Y Liu, CX Song Nucleic Acids Research 50 (18), e104-e104, 2022 | 14 | 2022 |
| The heterochronic gene Oryza sativa LIKE HETEROCHROMATIN PROTEIN 1 modulates miR156b/c/i/e levels Y Cui, J Cheng, S Ruan, P Qi, W Liu, H Bian, L Ye, Y Zhang, J Hu, G Dong, ... Journal of Integrative Plant Biology 62 (12), 1839-1852, 2020 | 11 | 2020 |
| Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection J Cheng, P Siejka-Zielińska, Y Liu, A Chandran, S Kriaucionis, CX Song Nucleic acids research 49 (13), e76-e76, 2021 | 10 | 2021 |
| Correction: arabidopsis flower and embryo developmental genes are repressed in seedlings by different combinations of polycomb group proteins in association with distinct sets … H Wang, C Liu, J Cheng, J Liu, L Zhang, C He, WH Shen, H Jin, L Xu, ... PLoS Genetics 13 (1), e1006574, 2017 | 6 | 2017 |
| GSHR, a Web-Based Platform Provides Gene Set-Level Analyses of Hormone Responses in Arabidopsis X Ran, J Liu, M Qi, Y Wang, J Cheng, Y Zhang Frontiers in Plant Science 9, 23, 2018 | 2 | 2018 |
| Absolute quantitative and base-resolution sequencing reveals comprehensive landscape of pseudouridine across the human transcriptome H Xu, L Kong, J Cheng, K Al Moussawi, X Chen, A Iqbal, PAC Wing, ... bioRxiv, 2024.01. 08.574649, 2024 | 1 | 2024 |
| Direct, bisulfite-free 5mC and 5hmC sequencing at single-cell resolution X Chen, J Cheng, L Kong, X Shu, H Xu, M Inoue, MSF Berrocal, ... bioRxiv, 2024.02. 12.579864, 2024 | | 2024 |
| Author Correction: Homology-mediated inter-chromosomal interactions in hexaploid wheat lead to specific subgenome territories following polyploidization and introgression J Jia, Y Xie, J Cheng, C Kong, M Wang, L Gao, F Zhao, J Guo, K Wang, ... Genome Biology 25, 2024 | | 2024 |
