Attributes of short linear motifs NE Davey, K Van Roey, RJ Weatheritt, G Toedt, B Uyar, B Altenberg, ... Molecular BioSystems 8 (1), 268-281, 2012 | 624 | 2012 |
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation K Van Roey, B Uyar, RJ Weatheritt, H Dinkel, M Seiler, A Budd, TJ Gibson, ... Chemical reviews 114 (13), 6733-6778, 2014 | 456 | 2014 |
ELM—the database of eukaryotic linear motifs H Dinkel, S Michael, RJ Weatheritt, NE Davey, K Van Roey, B Altenberg, ... Nucleic acids research 40 (D1), D242-D251, 2012 | 375 | 2012 |
The eukaryotic linear motif resource ELM: 10 years and counting H Dinkel, K Van Roey, S Michael, NE Davey, RJ Weatheritt, D Born, ... Nucleic acids research 42 (D1), D259-D266, 2014 | 365 | 2014 |
ELM 2016—data update and new functionality of the eukaryotic linear motif resource H Dinkel, K Van Roey, S Michael, M Kumar, B Uyar, B Altenberg, ... Nucleic acids research 44 (D1), D294-D300, 2016 | 336 | 2016 |
Degrons in cancer B Mészáros, M Kumar, TJ Gibson, B Uyar, Z Dosztányi Science signaling 10 (470), eaak9982, 2017 | 128 | 2017 |
Mutations in disordered regions can cause disease by creating dileucine motifs K Meyer, M Kirchner, B Uyar, JY Cheng, G Russo, ... Cell 175 (1), 239-253. e17, 2018 | 127 | 2018 |
genBlastG: using BLAST searches to build homologous gene models R She, JSC Chu, B Uyar, J Wang, K Wang, N Chen Bioinformatics 27 (15), 2141-2143, 2011 | 112 | 2011 |
Single-cell analyses of aging, inflammation and senescence B Uyar, D Palmer, A Kowald, HM Escobar, I Barrantes, S Möller, A Akalin, ... Ageing research reviews 64, 101156, 2020 | 109 | 2020 |
How pathogens use linear motifs to perturb host cell networks A Via, B Uyar, C Brun, A Zanzoni Trends in biochemical sciences 40 (1), 36-48, 2015 | 109 | 2015 |
Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? B Uyar, RJ Weatheritt, H Dinkel, NE Davey, TJ Gibson Molecular BioSystems 10 (10), 2626-2642, 2014 | 101 | 2014 |
FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells E Kolundzic, A Ofenbauer, SI Bulut, B Uyar, G Baytek, A Sommermeier, ... Developmental Cell 46 (5), 611-626. e12, 2018 | 86 | 2018 |
PiGx: reproducible genomics analysis pipelines with GNU Guix R Wurmus, B Uyar, B Osberg, V Franke, A Gosdschan, K Wreczycka, ... Gigascience 7 (12), giy123, 2018 | 67 | 2018 |
HOT or not: examining the basis of high-occupancy target regions K Wreczycka, V Franke, B Uyar, R Wurmus, S Bulut, B Tursun, A Akalin Nucleic acids research 47 (11), 5735-5745, 2019 | 57 | 2019 |
Transcriptional repression of NFKBIA triggers constitutive IKK‐ and proteasome‐independent p65/RelA activation in senescence M Kolesnichenko, N Mikuda, UE Höpken, E Kärgel, B Uyar, AB Tufan, ... The EMBO journal 40 (6), e104296, 2021 | 47 | 2021 |
Identifying tumor cells at the single-cell level using machine learning J Dohmen, A Baranovskii, J Ronen, B Uyar, V Franke, A Akalin Genome Biology 23 (1), 123, 2022 | 35 | 2022 |
RNA-seq analysis of the C. briggsae transcriptome B Uyar, JSC Chu, IA Vergara, SY Chua, MR Jones, T Wong, DL Baillie, ... Genome research 22 (8), 1567-1580, 2012 | 35 | 2012 |
Computational genomics with R A Akalin Chapman and Hall/CRC, 2020 | 30 | 2020 |
RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B Uyar, D Yusuf, R Wurmus, N Rajewsky, U Ohler, A Akalin Nucleic acids research 45 (10), e91-e91, 2017 | 29 | 2017 |
The IκB kinase complex is a regulator of mRNA stability N Mikuda, M Kolesnichenko, P Beaudette, O Popp, B Uyar, W Sun, ... The EMBO journal 37 (24), e98658, 2018 | 28 | 2018 |