Alignment-free inference of hierarchical and reticulate phylogenomic relationships G Bernard, CX Chan, Y Chan, XY Chua, Y Cong, JM Hogan, ... Briefings in Bioinformatics 20 (2), 426-435, 2019 | 84 | 2019 |
Scale adjustments for classifiers in high-dimensional, low sample size settings YB Chan, P Hall Biometrika 96 (2), 469-478, 2009 | 68 | 2009 |
The Ising susceptibility scaling function Y Chan, AJ Guttmann, BG Nickel, JHH Perk Journal of Statistical Physics 145, 549-590, 2011 | 53 | 2011 |
A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF Y Cong, Y Chan, MA Ragan Scientific reports 6 (1), 30308, 2016 | 52 | 2016 |
Using evidence of mixed populations to select variables for clustering very high-dimensional data Y Chan, P Hall Journal of the American Statistical Association 105 (490), 798-809, 2010 | 37 | 2010 |
Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations Y Chan, V Ranwez, C Scornavacca Journal of theoretical biology 432, 1-13, 2017 | 36 | 2017 |
Series expansions from the corner transfer matrix renormalization group method: the hard-squares model Y Chan Journal of Physics A: Mathematical and Theoretical 45 (8), 085001, 2012 | 24 | 2012 |
Bayesian inference of ancestral recombination graphs A Mahmoudi, J Koskela, J Kelleher, Y Chan, D Balding PLOS Computational Biology 18 (3), e1009960, 2022 | 22 | 2022 |
Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents G Tonkin-Hill, S Ruybal-Pesántez, KE Tiedje, V Rougeron, MF Duffy, ... PLoS Genetics 17 (2), e1009269, 2021 | 21 | 2021 |
The multilocus multispecies coalescent: a flexible new model of gene family evolution Q Li, C Scornavacca, N Galtier, YB Chan Systematic Biology 70 (4), 822-837, 2021 | 19 | 2021 |
Robust inference of genetic exchange communities from microbial genomes using TF-IDF Y Cong, Y Chan, CA Phillips, MA Langston, MA Ragan Frontiers in Microbiology 8, 21, 2017 | 17 | 2017 |
Exploring lateral genetic transfer among microbial genomes using TF-IDF Y Cong, Y Chan, MA Ragan Scientific Reports 6 (1), 29319, 2016 | 14 | 2016 |
A natural stochastic extension of the sandpile model on a graph Y Chan, JF Marckert, T Selig Journal of Combinatorial Theory, Series A 120 (7), 1913-1928, 2013 | 13 | 2013 |
Robust nearest-neighbor methods for classifying high-dimensional data Y Chan, P Hall | 12 | 2009 |
Exploring the space of gene/species reconciliations with transfers Y Chan, V Ranwez, C Scornavacca Journal of mathematical biology 71 (5), 1179-1209, 2015 | 10 | 2015 |
A Monte Carlo study of non-trapped self-avoiding walks Y Chan, A Rechnitzer Journal of Physics A: Mathematical and Theoretical 45 (40), 405004, 2012 | 9 | 2012 |
Unravelling var complexity: Relationship between DBLα types and var genes in Plasmodium falciparum MH Tan, H Shim, Y Chan, KP Day Frontiers in parasitology 1, 1006341, 2023 | 7 | 2023 |
Series expansions from the corner transfer matrix renormalization group method: II. Asymmetry and high-density hard squares Y Chan Journal of Physics A: Mathematical and Theoretical 46 (12), 125009, 2013 | 7 | 2013 |
Reconciliation of a gene network and species tree Y Chan, C Robin Journal of Theoretical Biology 472, 54-66, 2019 | 6 | 2019 |
Reconciliation-based detection of co-evolving gene families Y Chan, V Ranwez, C Scornavacca BMC bioinformatics 14, 1-9, 2013 | 6 | 2013 |