| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update AE Ostrovsky, A Mahmoud, AJ Lonie, A Syme, A Fouilloux, A Bretaudeau, ... NUCLEIC ACIDS RESEARCH, 2022 | 294* | 2022 |
| Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota AP Heikema, D Horst-Kreft, SA Boers, R Jansen, SD Hiltemann, ... Genes 11 (9), 1105, 2020 | 82 | 2020 |
| NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy W de Koning, M Miladi, S Hiltemann, A Heikema, JP Hays, S Flemming, ... GigaScience 9 (10), giaa105, 2020 | 35 | 2020 |
| Autologous dendritic cells pulsed with allogeneic tumour cell lysate induce tumour-reactive T-cell responses in patients with pancreatic cancer: A phase I study SP Lau, L Klaase, M Vink, J Dumas, K Bezemer, A van Krimpen, ... European Journal of Cancer 169, 20-31, 2022 | 33 | 2022 |
| RNA from stabilized whole blood enables more comprehensive immune gene expression profiling compared to RNA from peripheral blood mononuclear cells F van der Sijde, Y Li, R Schraauwen, W de Koning, CHJ van Eijck, ... PloS one 15 (6), e0235413, 2020 | 17 | 2020 |
| Spatial genomics reveals a high number and specific location of B cells in the pancreatic ductal adenocarcinoma microenvironment of long-term survivors HM Aziz, L Saida, W de Koning, AP Stubbs, Y Li, K Sideras, E Palacios, ... Frontiers in immunology 13, 995715, 2023 | 12 | 2023 |
| Feasibility and potential of transcriptomic analysis using the NanoString nCounter technology to aid the classification of rejection in kidney transplant biopsies H Varol, A Ernst, I Cristoferi, W Arns, CC Baan, M van Baardwijk, ... Transplantation 107 (4), 903-912, 2023 | 11 | 2023 |
| A multigene circulating biomarker to predict the lack of FOLFIRINOX response after a single cycle in patients with pancreatic ductal adenocarcinoma CWF van Eijck, W de Koning, F van der Sijde, M Moskie, BG Koerkamp, ... European Journal of Cancer 181, 119-134, 2023 | 10 | 2023 |
| Identifying molecular changes in early cervical cancer samples of patients that developed metastasis V de Geus, PC Ewing-Graham, W de Koning, MNC de Koning, ... Frontiers in oncology 11, 715077, 2022 | 10 | 2022 |
| Identification, Validation, and Utilization of Immune Cells in Pancreatic Ductal Adenocarcinoma Based on Marker Genes W De Koning, D Latifi, Y Li, CHJ Van Eijck, AP Stubbs, DAM Mustafa Frontiers in Immunology 12, 649061, 2021 | 10 | 2021 |
| Comparison of Illumina versus Nanopore 16S rRNA gene sequencing of the human nasal microbiota. Genes (Basel) 11: 1105 AP Heikema, D Horst-Kreft, SA Boers, R Jansen, SD Hiltemann, ... | 9 | 2020 |
| Increase of mast cells in COVID‐19 pneumonia may contribute to pulmonary fibrosis and thrombosis LV Wismans, B Lopuhaä, W de Koning, H Moeniralam, M van Oosterhout, ... Histopathology 82 (3), 407-419, 2023 | 7 | 2023 |
| The Role of the Respiratory Microbiome and Viral Presence in Lower Respiratory Tract Infection Severity in the First Five Years of Life I Hoefnagels, J van de Maat, JJA van Kampen, A van Rossum, C Obihara, ... Microorganisms 9 (7), 1446, 2021 | 7 | 2021 |
| Rintatolimod Induces Antiviral Activities in Human Pancreatic Cancer Cells: Opening for an Anti-COVID-19 Opportunity in Cancer Patients? DAM Mustafa, L Saida, D Latifi, LV Wismans, W de Koning, ... Cancers 13 (12), 2896, 2021 | 6 | 2021 |
| Tumor lineage-specific immune response in brain metastatic disease: opportunities for targeted immunotherapy regimen? S Najjary, JM Kros, W de Koning, D Vadgama, K Lila, J Wolf, ... Acta neuropathologica communications 11 (1), 64, 2023 | 3 | 2023 |
| Immunomodulatory Effects of Stereotactic Body Radiotherapy and Vaccination with Heat-Killed Mycobacterium Obuense (IMM-101) in Patients with Locally Advanced Pancreatic Cancer FR van t Land, SP Lau, W de Koning, L Klaase, M Vink, A van Krimpen, ... Cancers 14 (21), 5299, 2022 | 2 | 2022 |
| Lessons learnt from the introduction of nanopore sequencing A Heikema, W de Koning, Y Li, A Stubbs, JP Hays Clinical Microbiology and Infection 26 (10), 1286-1288, 2020 | 2 | 2020 |
| Antibiotic resistance detection W de Koning, S Hiltemann Galaxy Training Network, 2024 | | 2024 |
| Hands-on: Hands-on: Antibiotic resistance detection W de Koning, S Hiltemann Galaxy Training Network, 2024 | | 2024 |
| Clinical relevance of next-generation sequencing in 250 patients≤ 60 years with pancreatic ductal adenocarcinoma G Strijk, J Van Dongen, W De Koning, D Dollée, J De Vos-Geelen, ... HPB 26, S120, 2024 | | 2024 |
