| Analysis and visualization of longitudinal genomic and clinical data from the AACR project GENIE biopharma collaborative in cBioPortal I de Bruijn, R Kundra, B Mastrogiacomo, TN Tran, L Sikina, T Mazor, X Li, ... Cancer research 83 (23), 3861-3867, 2023 | 154 | 2023 |
| Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells S Funakoshi, I Fernandes, O Mastikhina, D Wilkinson, T Tran, W Dhahri, ... Nature Communications 12 (1), 3155, 2021 | 127 | 2021 |
| Tempora: cell trajectory inference using time-series single-cell RNA sequencing data TN Tran, GD Bader PLoS computational biology 16 (9), e1008205, 2020 | 71 | 2020 |
| A complete temporal transcription factor series in the fly visual system N Konstantinides, I Holguera, AM Rossi, A Escobar, L Dudragne, ... Nature 604 (7905), 316-322, 2022 | 69 | 2022 |
| Modeling human multi-lineage heart field development with pluripotent stem cells D Yang, J Gomez-Garcia, S Funakoshi, T Tran, I Fernandes, GD Bader, ... Cell Stem Cell 29 (9), 1382-1401. e8, 2022 | 36 | 2022 |
| Genetic ancestry correlates with somatic differences in a real-world clinical cancer sequencing cohort K Arora, TN Tran, Y Kemel, M Mehine, YL Liu, S Nandakumar, SA Smith, ... Cancer discovery 12 (11), 2552-2565, 2022 | 31 | 2022 |
| A comprehensive series of temporal transcription factors in the fly visual system N Konstantinides, AM Rossi, A Escobar, L Dudragne, YC Chen, T Tran, ... Biorxiv, 2021.06. 13.448242, 2021 | 16 | 2021 |
| The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer NJ Choudhury, JA Lavery, S Brown, I de Bruijn, J Jee, TN Tran, H Rizvi, ... Clinical Cancer Research 29 (17), 3418-3428, 2023 | 11 | 2023 |
| Control of tissue development and cell diversity by cell cycle-dependent transcriptional filtering M Abou Chakra, R Isserlin, TN Tran, GD Bader Elife 10, e64951, 2021 | 9 | 2021 |
| AACR Project GENIE BPC Core Team, AACR Project GENIE Consortium. Analysis and visualization of longitudinal genomic and clinical data from the AACR project GENIE biopharma … I de Bruijn, R Kundra, B Mastrogiacomo, TN Tran, L Sikina, T Mazor Cancer Res 83 (23), 3861-3867, 2023 | 3 | 2023 |
| Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells. Nat Commun. 2021; 12 S Funakoshi, I Fernandes, O Mastikhina, D Wilkinson, T Tran, W Dhahri | 2 | |
| Machine learning predictions improve identification of real-world cancer driver mutations TN Tran, C Fong, K Pichotta, A Luthra, R Shen, Y Chen, M Waters, S Kim, ... bioRxiv, 2024.03. 31.587410, 2024 | | 2024 |
| AI-derived predictions improve identification of real-world cancer driver mutations TN Tran, C Fong, K Pichotta, A Luthra, R Shen, Y Chen, M Waters, S Kim, ... Cancer Research 84 (6_Supplement), 1252-1252, 2024 | | 2024 |
| Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD) CJ Fong, K Pichotta, T Tran, M Waters, T Fu, M Pirun, M Altoe, ... Cancer Research 84 (6_Supplement), 3892-3892, 2024 | | 2024 |
| P2. 05-14 Understanding Genomic and Social Determinants of Cancer Immunotherapy Outcome across Ancestry J Carrot-Zhang, C Fong, M Waters, K Pichotta, J Jee, D Jutagir, D Ma, ... Journal of Thoracic Oncology 18 (11), S313-S314, 2023 | | 2023 |
| Large-scale clinicogenomic models of solid tumor CNS metastasis. J Jee, A Luthra, C Fong, K Pichotta, T Tran, M Altoe, A Miller, R Shen, ... Journal of Clinical Oncology 41 (16_suppl), 2037-2037, 2023 | | 2023 |
| Automated annotation for large-scale clinicogenomic models of lung cancer treatment response and overall survival J Jee, C Fong, K Pichotta, T Tran, A Luthra, M Altoe, S Maron, R Shen, ... Cancer Research 83 (7_Supplement), 5721-5721, 2023 | | 2023 |
| Understanding genomic and social determinants of cancer immunotherapy outcome across ancestry CJ Fong, M Waters, K Pichotta, J Jee, DR Jutagir, D Ma, ... Cancer Research 83 (7_Supplement), 4260-4260, 2023 | | 2023 |
| Identification of anti-neoplastic therapy given before initial visit at a referral center using natural language processing applied to medical oncology initial consultation notes TN Tran, KB Pichotta, SY Liu, C Fong, A Luthra, B Mastrogiacomo, ... Cancer Research 83 (7_Supplement), 4259-4259, 2023 | | 2023 |
| Ancestry inference and population-specific disparities in a real-world clinical sequencing cohort K Arora, TN Tran, YM Kemel, M Mehine, Y Liu, SA Smith, S Nandakumar, ... Cancer Research 82 (12_Supplement), 2182-2182, 2022 | | 2022 |
