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Todd DeSantis
Todd DeSantis
Co-founder & Vice President, Informatics, Second Genome, Inc.
在 secondgenome.com 的电子邮件经过验证 - 首页
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引用次数
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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Applied and environmental microbiology 72 (7), 5069-5072, 2006
116822006
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
102292012
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610-618, 2012
52612012
PyNAST: a flexible tool for aligning sequences to a template alignment
JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ...
Bioinformatics 26 (2), 266-267, 2010
38452010
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ...
Genome research 21 (3), 494-504, 2011
34712011
Deciphering the rhizosphere microbiome for disease-suppressive bacteria
R Mendes, M Kruijt, I De Bruijn, E Dekkers, M Van Der Voort, ...
Science 332 (6033), 1097-1100, 2011
25792011
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
24112012
Deep-sea oil plume enriches indigenous oil-degrading bacteria
TC Hazen, EA Dubinsky, TZ DeSantis, GL Andersen, YM Piceno, N Singh, ...
Science 330 (6001), 204-208, 2010
13872010
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ...
Nucleic acids research 34 (suppl_2), W394-W399, 2006
12062006
Chronic kidney disease alters intestinal microbial flora
ND Vaziri, J Wong, M Pahl, YM Piceno, J Yuan, TZ DeSantis, Z Ni, ...
Kidney international 83 (2), 308-315, 2013
11462013
Urban aerosols harbor diverse and dynamic bacterial populations
EL Brodie, TZ DeSantis, JPM Parker, IX Zubietta, YM Piceno, ...
Proceedings of the National Academy of Sciences 104 (1), 299-304, 2007
8232007
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
YJ Huang, CE Nelson, EL Brodie, TZ DeSantis, MS Baek, J Liu, T Woyke, ...
Journal of Allergy and Clinical Immunology 127 (2), 372-381. e3, 2011
7842011
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
7252011
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
Z Liu, TZ DeSantis, GL Andersen, R Knight
Nucleic acids research 36 (18), e120-e120, 2008
6552008
Expansion of urease-and uricase-containing, indole-and p-cresol-forming and contraction of short-chain fatty acid-producing intestinal microbiota in ESRD
J Wong, YM Piceno, TZ DeSantis, M Pahl, GL Andersen, ND Vaziri
American journal of nephrology 39 (3), 230-237, 2014
6262014
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
JJ Werner, O Koren, P Hugenholtz, TZ DeSantis, WA Walters, ...
The ISME journal 6 (1), 94-103, 2012
6192012
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
TZ DeSantis, EL Brodie, JP Moberg, IX Zubieta, YM Piceno, GL Andersen
Microbial ecology 53, 371-383, 2007
5992007
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
EL Brodie, TZ DeSantis, DC Joyner, SM Baek, JT Larsen, GL Andersen, ...
Applied and environmental microbiology 72 (9), 6288-6298, 2006
5592006
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
5282008
A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis
MN Rivas, OT Burton, P Wise, Y Zhang, SA Hobson, MG Lloret, ...
Journal of Allergy and Clinical Immunology 131 (1), 201-212, 2013
4822013
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