Steering electrons on moving pathways DN Beratan, SS Skourtis, IA Balabin, A Balaeff, S Keinan, R Venkatramani, ... Accounts of chemical research 42 (10), 1669-1678, 2009 | 194 | 2009 |
Structural dynamics of the lac repressor–DNA complex revealed by a multiscale simulation E Villa, A Balaeff, K Schulten Proceedings of the National Academy of Sciences 102 (19), 6783-6788, 2005 | 184 | 2005 |
Biological charge transfer via flickering resonance Y Zhang, C Liu, A Balaeff, SS Skourtis, DN Beratan Proceedings of the National Academy of Sciences 111 (28), 10049-10054, 2014 | 183 | 2014 |
PNA versus DNA: effects of structural fluctuations on electronic structure and hole-transport mechanisms E Hatcher, A Balaeff, S Keinan, R Venkatramani, DN Beratan Journal of the American Chemical Society 130 (35), 11752-11761, 2008 | 138 | 2008 |
Nucleic acid charge transfer: black, white and gray R Venkatramani, S Keinan, A Balaeff, DN Beratan Coordination chemistry reviews 255 (7-8), 635-648, 2011 | 136 | 2011 |
Modeling DNA loops using the theory of elasticity A Balaeff, L Mahadevan, K Schulten Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 73 (3 …, 2006 | 136 | 2006 |
Elastic rod model of a DNA loop in the lac operon A Balaeff, L Mahadevan, K Schulten Physical Review Letters 83 (23), 4900, 1999 | 105 | 1999 |
Multiscale method for simulating protein-DNA complexes E Villa, A Balaeff, L Mahadevan, K Schulten Multiscale Modeling & Simulation 2 (4), 527-553, 2004 | 102 | 2004 |
Role of nucleobase energetics and nucleobase interactions in single-stranded peptide nucleic acid charge transfer A Paul, S Bezer, R Venkatramani, L Kocsis, E Wierzbinski, A Balaeff, ... Journal of the American Chemical Society 131 (18), 6498-6507, 2009 | 72 | 2009 |
Evidence for a near-resonant charge transfer mechanism for double-stranded peptide nucleic acid R Venkatramani, KL Davis, E Wierzbinski, S Bezer, A Balaeff, S Keinan, ... Journal of the American Chemical Society 133 (1), 62-72, 2011 | 66 | 2011 |
Structural basis for cooperative DNA binding by CAP and lac repressor A Balaeff, L Mahadevan, K Schulten Structure 12 (1), 123-132, 2004 | 65 | 2004 |
Modelling DNA loops using continuum and statistical mechanics One contribution of 16 to a Theme ‘The mechanics of DNA’ A Balaeff, CR Koudella, L Mahadevan, K Schulten Philosophical Transactions of the Royal Society of London. Series A …, 2004 | 64 | 2004 |
Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations W He, E Hatcher, A Balaeff, DN Beratan, RR Gil, M Madrid, C Achim Journal of the American Chemical Society 130 (40), 13264-13273, 2008 | 62 | 2008 |
Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes E Wierzbinski, A de Leon, X Yin, A Balaeff, KL Davis, S Reppireddy, ... Journal of the American Chemical Society 134 (22), 9335-9342, 2012 | 50 | 2012 |
Structure prediction of a complex between the chromosomal protein HMG‐D and DNA A Balaeff, MEA Churchill, K Schulten Proteins: Structure, Function, and Bioinformatics 30 (2), 113-135, 1998 | 47 | 1998 |
Charge splitters and charge transport junctions based on guanine quadruplexes R Sha, L Xiang, C Liu, A Balaeff, Y Zhang, P Zhang, Y Li, DN Beratan, ... Nature nanotechnology 13 (4), 316-321, 2018 | 46 | 2018 |
Nonequilibrium hybridization enables discrimination of a point mutation within 5–40 C M Stancescu, TA Fedotova, J Hooyberghs, A Balaeff, DM Kolpashchikov Journal of the American Chemical Society 138 (41), 13465-13468, 2016 | 37 | 2016 |
B-DNA to zip-DNA: simulating a DNA transition to a novel structure with enhanced charge-transport characteristics A Balaeff, SL Craig, DN Beratan The Journal of Physical Chemistry A 115 (34), 9377-9391, 2011 | 36 | 2011 |
Cations modulate actin bundle mechanics, assembly dynamics, and structure N Castaneda, T Zheng, HJ Rivera-Jacquez, HJ Lee, J Hyun, A Balaeff, ... The Journal of Physical Chemistry B 122 (14), 3826-3835, 2018 | 33 | 2018 |
DNA sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency Y Lysov, A Chernyi, A Balaeff, K Beattie, M A. Journal of Biomolecular Structure and Dynamics 11 (4), 797-812, 1994 | 29 | 1994 |