A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1184 | 2013 |
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008 | 685 | 2008 |
Towards a genome-scale kinetic model of cellular metabolism K Smallbone, E Simeonidis, N Swainston, P Mendes BMC systems biology 4, 1-9, 2010 | 199 | 2010 |
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes K Smallbone, HL Messiha, KM Carroll, CL Winder, N Malys, WB Dunn, ... FEBS letters 587 (17), 2832-2841, 2013 | 158 | 2013 |
Further developments towards a genome-scale metabolic model of yeast PD Dobson, K Smallbone, D Jameson, E Simeonidis, K Lanthaler, P Pir, ... BMC systems biology 4, 1-7, 2010 | 142 | 2010 |
Something from nothing− bridging the gap between constraint‐based and kinetic modelling K Smallbone, E Simeonidis, DS Broomhead, DB Kell The FEBS journal 274 (21), 5576-5585, 2007 | 126 | 2007 |
Genome-scale modeling for metabolic engineering E Simeonidis, ND Price Journal of Industrial Microbiology and Biotechnology 42 (3), 327-338, 2015 | 116 | 2015 |
Systems biology: the elements and principles of life HV Westerhoff, C Winder, H Messiha, E Simeonidis, M Adamczyk, ... FEBS letters 583 (24), 3882-3890, 2009 | 105 | 2009 |
Flux balance analysis: a geometric perspective K Smallbone, E Simeonidis Journal of theoretical biology 258 (2), 311-315, 2009 | 98 | 2009 |
Macromolecular networks and intelligence in microorganisms HV Westerhoff, AN Brooks, E Simeonidis, R García-Contreras, F He, ... Frontiers in microbiology 5, 379, 2014 | 92 | 2014 |
Capturing the essence of a metabolic network: a flux balance analysis approach E Murabito, E Simeonidis, K Smallbone, J Swinton Journal of theoretical biology 260 (3), 445-452, 2009 | 56 | 2009 |
Robustness of the p53 network and biological hackers L Dartnell, E Simeonidis, M Hubank, S Tsoka, IDL Bogle, ... FEBS letters 579 (14), 3037-3042, 2005 | 55 | 2005 |
Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast Z Wang, SA Danziger, BD Heavner, S Ma, JJ Smith, S Li, T Herricks, ... PLoS computational biology 13 (5), e1005489, 2017 | 51 | 2017 |
Systematic integration of experimental data and models in systems biology P Li, JO Dada, D Jameson, I Spasic, N Swainston, K Carroll, W Dunn, ... BMC bioinformatics 11, 1-11, 2010 | 49 | 2010 |
Why does yeast ferment? A flux balance analysis study E Simeonidis, E Murabito, K Smallbone, HV Westerhoff Biochemical Society Transactions 38 (5), 1225-1229, 2010 | 34 | 2010 |
MINLP models for the synthesis of optimal peptide tags and downstream protein processing E Simeonidis, JM Pinto, ME Lienqueo, S Tsoka, LG Papageorgiou Biotechnology progress 21 (3), 875-884, 2005 | 32 | 2005 |
Mechanistic modeling of aberrant energy metabolism in human disease V Sangar, JA Eddy, E Simeonidis, ND Price Frontiers in physiology 3, 404, 2012 | 29 | 2012 |
Analysis of metabolic networks using a pathway distance metric through linear programming E Simeonidis, SCG Rison, JM Thornton, IDL Bogle, LG Papageorgiou Metabolic engineering 5 (3), 211-219, 2003 | 27 | 2003 |
MediaDB: a database of microbial growth conditions in defined media MA Richards, V Cassen, BD Heavner, NE Ajami, A Herrmann, ... PLoS One 9 (8), e103548, 2014 | 26 | 2014 |
Building a kinetic model of trehalose biosynthesis in Saccharomyces cerevisiae K Smallbone, N Malys, HL Messiha, JA Wishart, E Simeonidis Methods in Enzymology 500, 355-370, 2011 | 23 | 2011 |