Impact of protein conformational diversity on AlphaFold predictions T Saldaño, N Escobedo, J Marchetti, DJ Zea, J Mac Donagh, ... Bioinformatics 38 (10), 2742-2748, 2022 | 93 | 2022 |
Conformational diversity analysis reveals three functional mechanisms in proteins AM Monzon, DJ Zea, MS Fornasari, TE Saldaño, S Fernandez-Alberti, ... PLoS computational biology 13 (2), e1005398, 2017 | 51 | 2017 |
Conformational diversity and the emergence of sequence signatures during evolution G Parisi, DJ Zea, AM Monzon, C Marino-Buslje Current opinion in structural biology 32, 58-65, 2015 | 42 | 2015 |
Protein conformational diversity correlates with evolutionary rate D Javier Zea, A Miguel Monzon, MS Fornasari, C Marino-Buslje, G Parisi Molecular biology and evolution 30 (7), 1500-1503, 2013 | 36 | 2013 |
I-COMS: Interprotein-COrrelated mutations server J Iserte, FL Simonetti, DJ Zea, E Teppa, C Marino-Buslje Nucleic Acids Research 43 (W1), W320-W325, 2015 | 31 | 2015 |
Protein–protein interactions leave evolutionary footprints: High molecular coevolution at the core of interfaces E Teppa, DJ Zea, C Marino‐Buslje Protein Science 26 (12), 2438-2444, 2017 | 28 | 2017 |
Disorder transitions and conformational diversity cooperatively modulate biological function in proteins DJ Zea, AM Monzon, C Gonzalez, MS Fornasari, SCE Tosatto, G Parisi Protein Science 25 (6), 1138-1146, 2016 | 25 | 2016 |
Homology modeling in a dynamical world AM Monzon, DJ Zea, C Marino‐Buslje, G Parisi Protein Science 26 (11), 2195-2206, 2017 | 22 | 2017 |
MIToS. jl: mutual information tools for protein sequence analysis in the Julia language DJ Zea, D Anfossi, M Nielsen, C Marino-Buslje Bioinformatics 33 (4), 564-565, 2017 | 21 | 2017 |
From interaction networks to interfaces, scanning intrinsically disordered regions using AlphaFold2 H Bret, J Gao, DJ Zea, J Andreani, R Guerois Nature Communications 15 (1), 597, 2024 | 16 | 2024 |
Assessing conservation of alternative splicing with evolutionary splicing graphs DJ Zea, S Laskina, A Baudin, H Richard, E Laine Genome Research 31 (8), 1462-1473, 2021 | 16 | 2021 |
On the dynamical incompleteness of the Protein Data Bank C Marino-Buslje, AM Monzon, DJ Zea, MS Fornasari, G Parisi Briefings in Bioinformatics 20 (1), 356-359, 2019 | 15 | 2019 |
How is structural divergence related to evolutionary information? DJ Zea, AM Monzon, G Parisi, C Marino-Buslje Molecular phylogenetics and evolution 127, 859-866, 2018 | 13 | 2018 |
Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the jnk family A Ait-Hamlat, DJ Zea, A Labeeuw, L Polit, H Richard, E Laine Journal of molecular biology 432 (7), 2121-2140, 2020 | 9 | 2020 |
Highlights of the 1st Argentine Symposium of Young Bioinformatics Researchers (1SAJIB) organized by the ISCB RSG-Argentina RG Parra, LA Defelipe, AB Guzovsky, A Monzón, F Cravero, E Mancini, ... PeerJ, 2016 | 6 | 2016 |
Coevolution analysis of amino-acids reveals diversified drug-resistance solutions in viral sequences: a case study of hepatitis B virus E Teppa, F Nadalin, C Combet, DJ Zea, L David, A Carbone Virus Evolution 6 (1), veaa006, 2020 | 5 | 2020 |
Intrinsically disordered protein ensembles shape evolutionary rates revealing conformational patterns N Palopoli, J Marchetti, AM Monzon, DJ Zea, SCE Tosatto, MS Fornasari, ... Journal of Molecular Biology 433 (3), 166751, 2021 | 4 | 2021 |
COVTree: Coevolution in OVerlapped sequences by Tree analysis server E Teppa, DJ Zea, F Oteri, A Carbone Nucleic Acids Research 48 (W1), W558-W565, 2020 | 3 | 2020 |
Exploring protein conformational diversity AM Monzon, MS Fornasari, DJ Zea, G Parisi Computational Methods in Protein Evolution, 353-365, 2019 | 3 | 2019 |
ASES: visualizing evolutionary conservation of alternative splicing in proteins DJ Zea, H Richard, E Laine Bioinformatics 38 (9), 2615-2616, 2022 | 2 | 2022 |