Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis, MS Kim, ... Cell 183 (5), 1185-1201. e20, 2020 | 235 | 2020 |
Massively systematic transcript end readout,“MASTER”: Transcription start site selection, transcriptional slippage, and transcript yields IO Vvedenskaya, Y Zhang, SR Goldman, A Valenti, V Visone, DM Taylor, ... Molecular cell 60 (6), 953-965, 2015 | 76 | 2015 |
CapZyme-seq comprehensively defines promoter-sequence determinants for RNA 5′ capping with NAD+ IO Vvedenskaya, JG Bird, Y Zhang, Y Zhang, X Jiao, I Barvík, L Krásný, ... Molecular cell 70 (3), 553-564. e9, 2018 | 75 | 2018 |
Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection JT Winkelman, IO Vvedenskaya, Y Zhang, Y Zhang, JG Bird, DM Taylor, ... Science 351 (6277), 1090-1093, 2016 | 67 | 2016 |
The Pediatric Cell Atlas: defining the growth phase of human development at single-cell resolution DM Taylor, BJ Aronow, K Tan, K Bernt, N Salomonis, CS Greene, ... Developmental cell 49 (1), 10-29, 2019 | 63 | 2019 |
Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ... Science translational medicine 15 (708), eabq1533, 2023 | 62 | 2023 |
A joint deep learning model enables simultaneous batch effect correction, denoising, and clustering in single-cell transcriptomics J Lakkis, D Wang, Y Zhang, G Hu, K Wang, H Pan, L Ungar, MP Reilly, ... Genome research 31 (10), 1753-1766, 2021 | 53 | 2021 |
Interactions between RNA polymerase and the core recognition element are a determinant of transcription start site selection IO Vvedenskaya, H Vahedian-Movahed, Y Zhang, DM Taylor, RH Ebright, ... Proceedings of the National Academy of Sciences 113 (21), E2899-E2905, 2016 | 45 | 2016 |
XACT-seq comprehensively defines the promoter-position and promoter-sequence determinants for initial-transcription pausing JT Winkelman, C Pukhrambam, IO Vvedenskaya, Y Zhang, DM Taylor, ... Molecular cell 79 (5), 797-811. e8, 2020 | 22 | 2020 |
Scedar: a scalable Python package for single-cell RNA-seq exploratory data analysis Y Zhang, MS Kim, ER Reichenberger, B Stear, DM Taylor PLoS computational biology 16 (4), e1007794, 2020 | 13 | 2020 |
PTEN‐induced kinase 1 is associated with renal aging, via the cGAS‐STING pathway MH Ha, MS Kim, HJ An, MJ Sung, YH Lee, DH Yang, SH Jung, J Baek, ... Aging Cell, e13865, 2023 | 9 | 2023 |
Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli KS Skalenko, L Li, Y Zhang, IO Vvedenskaya, JT Winkelman, AL Cope, ... Proceedings of the National Academy of Sciences 118 (27), e2106388118, 2021 | 7 | 2021 |