Estimating divergence times in large molecular phylogenies K Tamura, FU Battistuzzi, P Billing-Ross, O Murillo, A Filipski, S Kumar Proceedings of the National Academy of Sciences 109 (47), 19333-19338, 2012 | 636 | 2012 |
exRNA atlas analysis reveals distinct extracellular RNA cargo types and their carriers present across human biofluids OD Murillo, W Thistlethwaite, J Rozowsky, SL Subramanian, R Lucero, ... Cell 177 (2), 463-477.e15, 2019 | 270 | 2019 |
The extracellular RNA communication consortium: establishing foundational knowledge and technologies for extracellular RNA research S Das, AB Abdel-Mageed, C Adamidi, PD Adelson, KM Akat, E Alsop, ... Cell 177 (2), 231-242, 2019 | 180 | 2019 |
Dissecting the contribution of host genetics and the microbiome in complex behaviors SA Buffington, SW Dooling, M Sgritta, C Noecker, OD Murillo, DF Felice, ... Cell 184 (7), 1740-1756.e16, 2021 | 133 | 2021 |
Glioma-derived miRNA-containing extracellular vesicles induce angiogenesis by reprogramming brain endothelial cells R Lucero, V Zappulli, A Sammarco, OD Murillo, PS Cheah, S Srinivasan, ... Cell Reports 30 (7), 2065-2074.e4, 2020 | 129 | 2020 |
Prospects for building large timetrees using molecular data with incomplete gene coverage among species A Filipski, O Murillo, A Freydenzon, K Tamura, S Kumar Molecular Biology and Evolution 31 (9), 2542-2550, 2014 | 64 | 2014 |
A protocol for diagnosing the effect of calibration priors on posterior time estimates: a case study for the Cambrian explosion of animal phyla FU Battistuzzi, P Billing-Ross, O Murillo, A Filipski, S Kumar Molecular Biology and Evolution 32 (7), 1907-1912, 2015 | 39 | 2015 |
Predicting clone genotypes from tumor bulk sequencing of multiple samples S Miura, K Gomez, O Murillo, LA Huuki, T Vu, T Buturla, S Kumar Bioinformatics 34 (23), 4017-4026, 2018 | 33 | 2018 |
Phylogenetic placement of metagenomic reads using the minimum evolution principle A Filipski, K Tamura, P Billing-Ross, O Murillo, S Kumar BMC Genomics 16 (S1), S13, 2015 | 22 | 2015 |
Targeted mass spectrometry enables multiplexed quantification of immunomodulatory proteins in clinical biospecimens JR Whiteaker, RA Lundeen, L Zhao, RM Schoenherr, A Burian, D Huang, ... Frontiers in Immunology 12, 2021 | 16 | 2021 |
Testicular germ cell tumors arise in the absence of sex-specific differentiation NJ Webster, RL Maywald, SM Benton, EP Dawson, OD Murillo, ... Development 148 (9), dev197111, 2021 | 13 | 2021 |
Internal standard triggered-parallel reaction monitoring mass spectrometry enables multiplexed quantification of candidate biomarkers in plasma JJ Kennedy, JR Whiteaker, RG Ivey, A Burian, S Chowdhury, CF Tsai, ... Analytical Chemistry 94 (27), 9540-9547, 2022 | 12 | 2022 |
Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer S Chowdhury, JJ Kennedy, RG Ivey, OD Murillo, N Hosseini, X Song, ... Cell 186 (16), 3476-3498. e35, 2023 | 11 | 2023 |
XDec Simplex Map of Breast Cancer Cell States Enables Precise Modeling and Targeting of Breast Cancer OD Murillo, V Petrosyan, EL LaPlante, LE Dobrolecki, MT Lewis, ... bioRxiv, 2022 | 3 | 2022 |
A multiplexed assay for quantifying immunomodulatory proteins supports correlative studies in immunotherapy clinical trials JR Whiteaker, L Zhao, RM Schoenherr, D Huang, RA Lundeen, ... Frontiers in Oncology 13, 1168710, 2023 | 1 | 2023 |
Monitoring Both Extended and Tryptic Forms of Stable Isotope-Labeled Standard Peptides Provides an Internal Quality Control of Proteolytic Digestion in Targeted Mass … RA Lundeen, JJ Kennedy, OD Murillo, RG Ivey, L Zhao, RM Schoenherr, ... Molecular & Cellular Proteomics 22 (9), 2023 | | 2023 |
Deconvolution of cancer cell states by the XDec-SM method OD Murillo, V Petrosyan, EL LaPlante, LE Dobrolecki, MT Lewis, ... PLoS Computational Biology 19 (8), e1011365, 2023 | | 2023 |