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Songhao Luo
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Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics
S Luo, Z Wang, Z Zhang, T Zhou, J Zhang
Nucleic Acids Research 51 (1), 68-83, 2023
222023
Inferring transcriptional bursting kinetics from single-cell snapshot data using a generalized telegraph model
S Luo, Z Zhang, Z Wang, X Yang, X Chen, T Zhou, J Zhang
Royal Society Open Science 10 (4), 221057, 2023
152023
Exact distributions for stochastic gene expression models with arbitrary promoter architecture and translational bursting
M Chen, S Luo, M Cao, C Guo, T Zhou, J Zhang
Physical Review E 105 (1), 014405, 2022
112022
Silent transcription intervals and translational bursting lead to diverse phenotypic switching
X Yang, S Luo, Z Zhang, Z Wang, T Zhou, J Zhang
Physical Chemistry Chemical Physics 24 (43), 26600-26608, 2022
102022
Power-law behavior of transcriptional bursting regulated by enhancer–promoter communication
Z Wang, Z Zhang, S Luo, T Zhou, J Zhang
Genome Research 34 (1), 106-118, 2024
5*2024
4D nucleome equation predicts gene expression controlled by long-range enhancer-promoter interaction
Z Wang, S Luo, Z Zhang, T Zhou, J Zhang
PLOS Computational Biology 19 (12), e1011722, 2023
22023
Plasma microRNA-15a/16-1-based machine learning for early detection of hepatitis B virus-related hepatocellular carcinoma
H Wei, S Luo, Y Bi, C Liao, Y Lian, J Zhang, Y Huang
Liver Research, 2024
12024
A Unified Probabilistic Framework for Modeling and Inferring Spatial Transcriptomic Data
Z Huang, S Luo, Z Zhang, Z Wang, T Zhou, J Zhang
Current Bioinformatics 19 (3), 222-234, 2024
12024
Phase separation reduces cell-to-cell variability of transcriptional bursting
L Hong, Z Wang, Z Zhang, S Luo, T Zhou, J Zhang
Mathematical Biosciences 367, 109127, 2024
12024
A multi-omic single-cell landscape of cellular diversification in the developing human cerebral cortex
Y Tian, X Wu, S Luo, D Xiong, R Liu, L Hu, Y Yuan, G Shi, J Yao, Z Huang, ...
Computational and Structural Biotechnology Journal 23, 2173-2189, 2024
2024
Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage
Z Huang, S Luo, Z Wang, Z Zhang, B Jiang, Q Nie, J Zhang
bioRxiv, 2024.07. 10.602845, 2024
2024
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