Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics S Luo, Z Wang, Z Zhang, T Zhou, J Zhang Nucleic Acids Research 51 (1), 68-83, 2023 | 22 | 2023 |
Inferring transcriptional bursting kinetics from single-cell snapshot data using a generalized telegraph model S Luo, Z Zhang, Z Wang, X Yang, X Chen, T Zhou, J Zhang Royal Society Open Science 10 (4), 221057, 2023 | 15 | 2023 |
Exact distributions for stochastic gene expression models with arbitrary promoter architecture and translational bursting M Chen, S Luo, M Cao, C Guo, T Zhou, J Zhang Physical Review E 105 (1), 014405, 2022 | 11 | 2022 |
Silent transcription intervals and translational bursting lead to diverse phenotypic switching X Yang, S Luo, Z Zhang, Z Wang, T Zhou, J Zhang Physical Chemistry Chemical Physics 24 (43), 26600-26608, 2022 | 10 | 2022 |
Power-law behavior of transcriptional bursting regulated by enhancer–promoter communication Z Wang, Z Zhang, S Luo, T Zhou, J Zhang Genome Research 34 (1), 106-118, 2024 | 5* | 2024 |
4D nucleome equation predicts gene expression controlled by long-range enhancer-promoter interaction Z Wang, S Luo, Z Zhang, T Zhou, J Zhang PLOS Computational Biology 19 (12), e1011722, 2023 | 2 | 2023 |
Plasma microRNA-15a/16-1-based machine learning for early detection of hepatitis B virus-related hepatocellular carcinoma H Wei, S Luo, Y Bi, C Liao, Y Lian, J Zhang, Y Huang Liver Research, 2024 | 1 | 2024 |
A Unified Probabilistic Framework for Modeling and Inferring Spatial Transcriptomic Data Z Huang, S Luo, Z Zhang, Z Wang, T Zhou, J Zhang Current Bioinformatics 19 (3), 222-234, 2024 | 1 | 2024 |
Phase separation reduces cell-to-cell variability of transcriptional bursting L Hong, Z Wang, Z Zhang, S Luo, T Zhou, J Zhang Mathematical Biosciences 367, 109127, 2024 | 1 | 2024 |
A multi-omic single-cell landscape of cellular diversification in the developing human cerebral cortex Y Tian, X Wu, S Luo, D Xiong, R Liu, L Hu, Y Yuan, G Shi, J Yao, Z Huang, ... Computational and Structural Biotechnology Journal 23, 2173-2189, 2024 | | 2024 |
Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage Z Huang, S Luo, Z Wang, Z Zhang, B Jiang, Q Nie, J Zhang bioRxiv, 2024.07. 10.602845, 2024 | | 2024 |