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Yatish Turakhia
Yatish Turakhia
在 ucsd.edu 的电子邮件经过验证 - 首页
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引用次数
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Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, ...
Nature Genetics 53 (6), 809-816, 2021
2972021
Domain-specific hardware accelerators
WJ Dally, Y Turakhia, S Han
Communications of the ACM 63 (7), 48-57, 2020
2442020
Darwin: A Genomics Co-processor Provides up to 15,000 X Acceleration on Long Read Assembly
Y Turakhia, G Bejerano, WJ Dally
Proceedings of the Twenty-Third International Conference on Architectural …, 2018
187*2018
Cherry-picking: Exploiting process variations in dark-silicon homogeneous chip multi-processors
B Raghunathan, Y Turakhia, S Garg, D Marculescu
2013 Design, Automation & Test in Europe Conference & Exhibition (DATE), 39-44, 2013
1412013
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape
Y Turakhia, B Thornlow, A Hinrichs, J McBroome, N Ayala, C Ye, K Smith, ...
Nature 609 (7929), 994-997, 2022
122*2022
Mutation rates and selection on synonymous mutations in SARS-CoV-2
N De Maio, CR Walker, Y Turakhia, R Lanfear, R Corbett-Detig, ...
Genome Biology and Evolution 13 (5), evab087, 2021
1062021
Stability of SARS-CoV-2 phylogenies
Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ...
PLoS genetics 16 (11), e1009175, 2020
1012020
HaDeS: architectural synthesis for heterogeneous dark silicon chip multi-processors
Y Turakhia, B Raghunathan, S Garg, D Marculescu
Proceedings of the 50th Annual Design Automation Conference, 1-7, 2013
782013
A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees
J McBroome, B Thornlow, AS Hinrichs, A Kramer, N De Maio, N Goldman, ...
Molecular biology and evolution 38 (12), 5819-5824, 2021
772021
A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales
A Marcovitz, Y Turakhia, HI Chen, M Gloudemans, BA Braun, H Wang, ...
Proceedings of the National Academy of Sciences 116 (42), 21094-21103, 2019
54*2019
Low-power architecture for sparse neural network
YG Turakhia, J Jaffari, A Panda, K Chatha
US Patent App. 15/377,858, 2018
392018
Darwin-WGA: A co-processor provides increased sensitivity in whole genome alignments with high speedup
Y Turakhia, SD Goenka, G Bejerano, WIJ Dally
2019 IEEE International Symposium on High Performance Computer Architecture …, 2019
352019
Architecture for sparse neural network acceleration
YG Turakhia, J Jaffari, A Panda, K Chatha
US Patent 10,871,964, 2020
322020
Maximum likelihood pandemic-scale phylogenetics
N De Maio, P Kalaghatgi, Y Turakhia, R Corbett-Detig, BQ Minh, ...
Nature Genetics 55 (5), 746-752, 2023
292023
SegAlign: A scalable GPU-based whole genome aligner
SD Goenka, Y Turakhia, B Paten, M Horowitz
SC20: International Conference for High Performance Computing, Networking …, 2020
202020
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2
C Ye, B Thornlow, A Hinrichs, A Kramer, C Mirchandani, D Torvi, ...
Bioinformatics 38 (15), 3734-3740, 2022
182022
Identifying SARS-CoV-2 regional introductions and transmission clusters in real time
J McBroome, J Martin, A de Bernardi Schneider, Y Turakhia, ...
Virus Evolution 8 (1), veac048, 2022
182022
The magazine archive includes every article published in Communications of the ACM for over the past 50 years.
MY Vardi
Communications of the ACM 53 (9), 5, 2010
17*2010
A phylogeny-based metric for estimating changes in transmissibility from recurrent mutations in SARS-CoV-2
D Richard, LP Shaw, R Lanfear, R Corbett-Detig, A Hinrichs, J McBroome, ...
BioRxiv, 2021.05. 06.442903, 2021
152021
phastSim: efficient simulation of sequence evolution for pandemic-scale datasets
N De Maio, W Boulton, L Weilguny, CR Walker, Y Turakhia, ...
PLoS computational biology 18 (4), e1010056, 2022
142022
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