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Trends in antimicrobial resistance in bloodstream infection isolates at a large urban hospital in Malawi (1998–2016): a surveillance study P Musicha, JE Cornick, N Bar-Zeev, N French, C Masesa, B Denis, ... The Lancet infectious diseases 17 (10), 1042-1052, 2017 | 287 | 2017 |
Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole … SW Lo, RA Gladstone, AJ Van Tonder, JA Lees, M Du Plessis, R Benisty, ... The Lancet Infectious Diseases 19 (7), 759-769, 2019 | 204 | 2019 |
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact RA Gladstone, SW Lo, JA Lees, NJ Croucher, AJ Van Tonder, J Corander, ... EBioMedicine 43, 338-346, 2019 | 168 | 2019 |
Streptococcus pneumoniae: the evolution of antimicrobial resistance to beta-lactams, fluoroquinolones and macrolides JE Cornick, SD Bentley Microbes and infection 14 (7-8), 573-583, 2012 | 145 | 2012 |
SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data L Epping, AJ Van Tonder, RA Gladstone, ... Microbial genomics 4 (7), e000186, 2018 | 98 | 2018 |
Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci T Azarian, PK Mitchell, M Georgieva, CM Thompson, A Ghouila, ... PLoS pathogens 14 (11), e1007438, 2018 | 95 | 2018 |
High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children AW Kamng’ona, J Hinds, N Bar-Zeev, KA Gould, C Chaguza, C Msefula, ... BMC infectious diseases 15, 1-11, 2015 | 84 | 2015 |
Mechanisms and impact of genetic recombination in the evolution of Streptococcus pneumoniae C Chaguza, JE Cornick, DB Everett Computational and structural biotechnology journal 13, 241-247, 2015 | 79 | 2015 |
Emerging resistance to empiric antimicrobial regimens for pediatric bloodstream infections in Malawi (1998–2017) PY Iroh Tam, P Musicha, K Kawaza, J Cornick, B Denis, B Freyne, ... Clinical Infectious Diseases 69 (1), 61-68, 2019 | 75 | 2019 |
Determining the worldwide epidemiology of surgical site infections after gastrointestinal resection surgery: protocol for a multicentre, international, prospective cohort study … GS Collaborative BMJ open 7 (7), e012150, 2017 | 71 | 2017 |
Recombination in Streptococcus pneumoniae lineages increase with carriage duration and size of the polysaccharide capsule C Chaguza, CP Andam, SR Harris, JE Cornick, M Yang, L Bricio-Moreno, ... MBio 7 (5), 10.1128/mbio. 01053-16, 2016 | 67 | 2016 |
Genetic characterisation of Malawian pneumococci prior to the roll-out of the PCV13 vaccine using a high-throughput whole genome sequencing approach DB Everett, J Cornick, B Denis, C Chewapreecha, N Croucher, S Harris, ... Public Library of Science 7 (9), e44250, 2012 | 54 | 2012 |
Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study SW Lo, K Mellor, R Cohen, AR Alonso, S Belman, N Kumar, PA Hawkins, ... The Lancet Microbe 3 (10), e735-e743, 2022 | 40 | 2022 |
Invasive Streptococcus pneumoniae in children, Malawi, 2004–2006 JE Cornick, DB Everett, C Broughton, BB Denis, DL Banda, ED Carrol, ... Emerging infectious diseases 17 (6), 1107, 2011 | 39 | 2011 |
Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi C Chaguza, JE Cornick, CP Andam, RA Gladstone, M Alaerts, P Musicha, ... Vaccine 35 (35), 4594-4602, 2017 | 37 | 2017 |
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates RA Gladstone, SW Lo, R Goater, C Yeats, B Taylor, J Hadfield, JA Lees, ... Microbial genomics 6 (5), e000357, 2020 | 35 | 2020 |
Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae JE Cornick, C Chaguza, SR Harris, F Yalcin, M Senghore, AM Kiran, ... Microbial Genomics 1 (2), e000027, 2015 | 31 | 2015 |
Genomic identification of a novel co-trimoxazole resistance genotype and its prevalence amongst Streptococcus pneumoniae in Malawi JE Cornick, SR Harris, CM Parry, MJ Moore, C Jassi, A Kamng'ona, ... Journal of Antimicrobial Chemotherapy 69 (2), 368-374, 2014 | 31 | 2014 |
Comparative genomic analysis of meningitis-and bacteremia-causing pneumococci identifies a common core genome BW Kulohoma, JE Cornick, C Chaguza, F Yalcin, SR Harris, KJ Gray, ... Infection and immunity 83 (10), 4165-4173, 2015 | 29 | 2015 |