REPuter: the manifold applications of repeat analysis on a genomic scale S Kurtz, JV Choudhuri, E Ohlebusch, C Schleiermacher, J Stoye, ... Nucleic acids research 29 (22), 4633-4642, 2001 | 1779 | 2001 |
Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23, 2020 | 1170 | 2020 |
Updating benchtop sequencing performance comparison S Jünemann, FJ Sedlazeck, K Prior, A Albersmeier, U John, J Kalinowski, ... Nature biotechnology 31 (4), 294-296, 2013 | 450 | 2013 |
A unifying view of genome rearrangements A Bergeron, J Mixtacki, J Stoye Algorithms in Bioinformatics: 6th International Workshop, WABI 2006, Zurich …, 2006 | 358 | 2006 |
Phylogenetic classification of short environmental DNA fragments L Krause, NN Diaz, A Goesmann, S Kelley, TW Nattkemper, F Rohwer, ... Nucleic acids research 36 (7), 2230-2239, 2008 | 344 | 2008 |
Rose: generating sequence families. J Stoye, D Evers, F Meyer Bioinformatics (Oxford, England) 14 (2), 157-163, 1998 | 342 | 1998 |
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor L Krause, NN Diaz, RA Edwards, KH Gartemann, H Krömeke, ... Journal of biotechnology 136 (1-2), 91-101, 2008 | 290 | 2008 |
Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19 JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ... Immunity 53 (6), 1296-1314. e9, 2020 | 274 | 2020 |
Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms A Mellmann, T Weniger, C Berssenbrügge, J Rothgänger, M Sammeth, ... BMC microbiology 7 (1), 1-6, 2007 | 268 | 2007 |
Efficient q-Gram Filters for Finding All ε-Matches over a Given Length KR Rasmussen, J Stoye, EW Myers Annual International Conference on Research in Computational Molecular …, 2005 | 203 | 2005 |
Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing S Jünemann, K Prior, R Szczepanowski, I Harks, B Ehmke, A Goesmann, ... Public Library of Science 7 (8), e41606, 2012 | 178 | 2012 |
DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment J Stoye, V Moulton, AWM Dress Bioinformatics 13 (6), 625-626, 1997 | 175 | 1997 |
Linear time algorithms for finding and representing all the tandem repeats in a string D Gusfield, J Stoye Journal of Computer and System Sciences 69 (4), 525-546, 2004 | 170 | 2004 |
Benchmarking tools for the alignment of functional noncoding DNA DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen BMC bioinformatics 5, 1-17, 2004 | 166 | 2004 |
Taxonomic classification of metagenomic shotgun sequences with CARMA3 W Gerlach, J Stoye Nucleic acids research 39 (14), e91-e91, 2011 | 160 | 2011 |
Finding All Common Intervals of k Permutations GM Landau, S Heber, J Stoye Combinatorial Pattern Matching: 12th Annual Symposium, CPM 2001 Jerusalem …, 2001 | 152 | 2001 |
r2cat: synteny plots and comparative assembly P Husemann, J Stoye Bioinformatics 26 (4), 570-571, 2010 | 148 | 2010 |
Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19 B Krämer, R Knoll, L Bonaguro, M ToVinh, J Raabe, ... Immunity 54 (11), 2650-2669. e14, 2021 | 145 | 2021 |
Multiple sequence alignment with the divide-and-conquer method J Stoye Gene 211 (2), GC45-GC56, 1998 | 142 | 1998 |
Efficient implementation of lazy suffix trees R Giegerich, S Kurtz, J Stoye Software: Practice and Experience 33 (11), 1035-1049, 2003 | 137 | 2003 |