Alignment-free clustering of UMI tagged DNA molecules B Orabi, E Erhan, B McConeghy, SV Volik, S Le Bihan, R Bell, CC Collins, ... Bioinformatics 35 (11), 1829-1836, 2019 | 29 | 2019 |
Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA AR Gawroński, YY Lin, B McConeghy, S LeBihan, H Asghari, C Koçkan, ... Nucleic acids research 47 (7), e38-e38, 2019 | 19 | 2019 |
Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments G Ebrahimi, B Orabi, M Robinson, C Chauve, R Flannigan, F Hach Iscience 25 (7), 2022 | 9* | 2022 |
Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing B Orabi, N Xie, B McConeghy, X Dong, C Chauve, F Hach Nucleic Acids Research 51 (2), e11-e11, 2023 | 4 | 2023 |
TKSM: Highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator F Karaoğlanoğlu, B Orabi, R Flannigan, C Chauve, F Hach Bioinformatics 40 (2), btae051, 2024 | 2 | 2024 |
Alignment-free clustering and error correction of UMI tagged DNA molecules B Orabi Simon Fraser University, 2018 | | 2018 |