Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022 | 199 | 2022 |
To Petabytes and beyond: recent advances in probabilistic and signal processing algorithms and their application to metagenomics RAL Elworth, Q Wang, PK Kota, CJ Barberan, B Coleman, A Balaji, ... Nucleic Acids Research, 2020 | 37 | 2020 |
EEG-based classification of bilingual unspoken speech using ANN A Balaji, A Haldar, K Patil, TS Ruthvik, CA Valliappan, M Jartarkar, ... 2017 39th Annual International Conference of the IEEE Engineering in …, 2017 | 36 | 2017 |
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning A Balaji, B Kille, AD Kappell, GD Godbold, M Diep, RAL Elworth, Z Qian, ... Genome biology 23 (1), 133, 2022 | 32 | 2022 |
Multiple genome alignment in the telomere-to-telomere assembly era B Kille, A Balaji, FJ Sedlazeck, M Nute, TJ Treangen Genome Biology 23 (1), 182, 2022 | 22 | 2022 |
Type II diabetes mellitus and obesity: Common links, existing therapeutics and future developments S Banerjee, I Talukdar, A Banerjee, A Gupta, A Balaji, R Aduri Journal of Biosciences 44, 1-13, 2019 | 20 | 2019 |
A Portable real time ECG device for arrhythmia detection using raspberry pi CA Valliappan, A Balaji, SR Thandayam, P Dhingra, V Baths Wireless Mobile Communication and Healthcare: 6th International Conference …, 2017 | 13* | 2017 |
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest D Albin, D Nasko, RAL Elworth, J Lu, A Balaji, C Diaz, N Shah, J Selengut, ... 2019 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2019 | 10 | 2019 |
KOMB: K-core based de novo characterization of copy number variation in microbiomes A Balaji, N Sapoval, C Seto, RAL Elworth, Y Fu, MG Nute, T Savidge, ... Computational and Structural Biotechnology Journal 20, 3208-3222, 2022 | 8* | 2022 |
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates AM Mc Cartney, M Mahmoud, M Jochum, DP Agustinho, B Zorman, ... F1000Research 10, 2021 | 5 | 2021 |
TNF-alpha regulates alternative splicing of genes participating in pathways of crucial metabolic syndromes; a transcriptome wide study JM Louis, C Vaz, A Balaji, V Tanavde, I Talukdar Cytokine 125, 154815, 2020 | 5 | 2020 |
The RNA secondary structural variation in the cyclization elements of the dengue genome and the possible implications in pathogenicity B Mishra, A Balaji, H Beesetti, S Swaminathan, R Aduri Virusdisease 31, 299-307, 2020 | 4 | 2020 |
SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens A Balaji, Y Liu, MG Nute, B Hu, A D. Kappell, D S. Lesassier, ... Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023 | 3* | 2023 |
Graph-based self-supervised learning for repeat detection in metagenomic assembly A Azizpour, A Balaji, TJ Treangen, S Segarra Genome Research, gr. 279136.124, 2024 | | 2024 |
GraSSRep: Graph-Based Self-supervised Learning for Repeat Detection in Metagenomic Assembly A Azizpour, A Balaji, TJ Treangen, S Segarra International Conference on Research in Computational Molecular Biology, 372-376, 2024 | | 2024 |
Journey into the unknown: graph and machine learning based approaches for improved characterization of novel pathogens. A Balaji | | 2023 |
Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine M Mahmoud, AR Gener, MM Khayat, AC English, A Balaji, A Zhou, ... F1000Research 9 (1141), 1141, 2020 | | 2020 |