Integrative deep models for alternative splicing A Jha, MR Gazzara, Y Barash Bioinformatics 33 (14), i274-i282, 2017 | 75 | 2017 |
Enhanced integrated gradients: improving interpretability of deep learning models using splicing codes as a case study A Jha, J K Aicher, M R Gazzara, D Singh, Y Barash Genome biology 21 (1), 1-22, 2020 | 67* | 2020 |
Ancient antagonism between CELF and RBFOX families tunes mRNA splicing outcomes MR Gazzara, MJ Mallory, R Roytenberg, JP Lindberg, A Jha, KW Lynch, ... Genome research 27 (8), 1360-1370, 2017 | 54 | 2017 |
RNA splicing analysis using heterogeneous and large RNA-seq datasets J Vaquero-Garcia, JK Aicher, S Jewell, MR Gazzara, CM Radens, A Jha, ... Nature communications 14 (1), 1230, 2023 | 28 | 2023 |
Identifying common transcriptome signatures of cancer by interpreting deep learning models A Jha, M Quesnel-Vallières, D Wang, A Thomas-Tikhonenko, KW Lynch, ... Genome Biology 23 (1), 1-23, 2022 | 26 | 2022 |
Multi-trait association studies discover pleiotropic loci between Alzheimer’s disease and cardiometabolic traits WP Bone, KM Siewert, A Jha, D Klarin, SM Damrauer, KM Chang, ... Alzheimer's research & therapy 13, 1-14, 2021 | 20 | 2021 |
MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis B Slaff, CM Radens, P Jewell, A Jha, NF Lahens, GR Grant, ... Nature communications 12 (1), 3353, 2021 | 19 | 2021 |
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools A Jha, SC Bohaczuk, Y Mao, J Ranchalis, BJ Mallory, AT Min, MO Hamm, ... Genome Research, 2024 | 10* | 2024 |
RNA-binding proteins PCBP1 and PCBP2 are critical determinants of murine erythropoiesis X Ji, A Jha, J Humenik, LR Ghanem, A Kromer, C Duncan-Lewis, ... Molecular and Cellular Biology 41 (9), e00668-20, 2021 | 10 | 2021 |
An Optimizing Compiler for Turing Machine Description Language. P Chakraborty, S Taneja, N Anand, A Jha, D Malik, A Nayar IUP Journal of Computer Sciences 5 (3), 2011 | 4 | 2011 |
Enhancing Hi-C contact matrices for loop detection with Capricorn, a multi-view diffusion model T Fang, Y Liu, A Woicik, M Lu, A Jha, X Wang, G Li, B Hristov, Z Liu, H Xu, ... bioRxiv, 2023.10. 25.564065, 2023 | | 2023 |
Assembling the Building Blocks for a Unified Splicing Code A Jha University of Pennsylvania, 2020 | | 2020 |
Predictive modeling framework for splice factor knockdown experiments A Jha Integrative RNA Biology Special Interest Group Meeting, 32, 2016 | | 2016 |
Generative modeling for RNA splicing code predictions and design D Wu, A Jha, S Jewell, N Maus, JR Gardner, Y Barash | | |