Machine Learning Pipelines: Provenance, Reproducibility and FAIR Data Principles S Samuel, F Löffler, B König-Ries Provenance and Annotation of Data and Processes, 226-230, 2020 | 46 | 2020 |
ProvBook: Provenance-based Semantic Enrichment of Interactive Notebooks for Reproducibility S Samuel, B König-Ries The 17th International Semantic Web Conference (ISWC) 2018 Demo Track, 2018 | 46 | 2018 |
Understanding experiments and research practices for reproducibility: an exploratory study S Samuel, B König-Ries PeerJ, e11140, 2021 | 35 | 2021 |
From human experts to machines: An LLM supported approach to ontology and knowledge graph construction VK Kommineni, B König-Ries, S Samuel arXiv preprint arXiv:2403.08345, 2024 | 20* | 2024 |
Computational reproducibility of Jupyter notebooks from biomedical publications S Samuel, D Mietchen GigaScience 13, giad113, 2024 | 20 | 2024 |
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach S Samuel, B König-Ries Journal of biomedical semantics 13 (1), 1, 2022 | 17 | 2022 |
ReproduceMeGit: A Visualization Tool for Analyzing Reproducibility of Jupyter Notebooks S Samuel, B König-Ries ProvenanceWeek 2020, 2020 | 14 | 2020 |
REPRODUCE-ME: Ontology-based Data Access for Reproducibility of Microscopy Experiments S Samuel, B König-Ries 14th Extended Semantic Web Conference (ESWC) 2017, 2017 | 13 | 2017 |
Towards reproducibility of microscopy experiments S Samuel, F Taubert, D Walther, B König-Ries, HM Bücker Methods 9, 245-253, 2017 | 13* | 2017 |
A provenance-based semantic approach to support understandability, reproducibility, and reuse of scientific experiments S Samuel | 11 | 2019 |
Integrative Data Management for Reproducibility of Microscopy Experiments S Samuel 14th Extended Semantic Web Conference (ESWC) 2017, 2017 | 11 | 2017 |
BiodivNERE: Gold standard corpora for named entity recognition and relation extraction in the biodiversity domain N Abdelmageed, F Löffler, L Feddoul, A Algergawy, S Samuel, J Gaikwad, ... Biodiversity Data Journal 10, 2022 | 10 | 2022 |
A collaborative semantic-based provenance management platform for reproducibility S Samuel, B König-Ries PeerJ Computer Science 8, e921, 2022 | 9 | 2022 |
Combining P-Plan and the REPRODUCE-ME Ontology to Achieve Semantic Enrichment of Scientific Experiments using Interactive Notebooks S Samuel, B König-Ries 15th Extended Semantic Web Conference (ESWC) 2018, 2018 | 9 | 2018 |
BiodivOnto: towards a core ontology for biodiversity N Abdelmageed, A Algergawy, S Samuel, B König-Ries European Semantic Web Conference, 3-8, 2021 | 7 | 2021 |
The Story of an Experiment: A Provenance-based Semantic Approach towards Research Reproducibility S Samuel, K Groeneveld, F Taubert, D Walther, T Kache, T Langenstück, ... 11th International Conference on Semantic Web Applications and Tools for …, 2018 | 6 | 2018 |
How Reproducible are the Results Gained with the Help of Deep Learning Methods in Biodiversity Research? W Ahmed, VK Kommineni, B Koenig-ries, S Samuel Biodiversity Information Science and Standards 7, 2023 | 4 | 2023 |
MLProvLab: provenance management for data science notebooks D Kerzel, B König-Ries, S Sheeba Gesellschaft für Informatik eV, 2023 | 4 | 2023 |
A virtual “Werkstatt” for digitization in the sciences S Samuel, M Shadaydeh, S Böcker, B Brügmann, SF Bucher, V Deckert, ... Research Ideas and Outcomes 6, https://doi.org/10.3897/rio.6.e54106, 2020 | 4 | 2020 |
MLProvCodeGen: A Tool for Provenance Data Input and Capture of Customizable Machine Learning Scripts TA Mustafa, B König-Ries, S Samuel Gesellschaft für Informatik eV, 2023 | 3 | 2023 |