| Directed network wiring identifies a key protein interaction in embryonic stem cell differentiation N Yasui, GM Findlay, GD Gish, MS Hsiung, J Huang, M Tucholska, ... Molecular cell 54 (6), 1034-1041, 2014 | 42 | 2014 |
| Physics‐based all‐atom modeling of RNA energetics and structure LG Smith, J Zhao, DH Mathews, DH Turner Wiley Interdisciplinary Reviews: RNA 8 (5), e1422, 2017 | 37 | 2017 |
| Apolipoprotein E4 has extensive conformational heterogeneity in lipid-free and lipid-bound forms MD Stuchell-Brereton, MI Zimmerman, JJ Miller, UL Mallimadugula, ... Proceedings of the National Academy of Sciences 120 (7), e2215371120, 2023 | 25 | 2023 |
| Drug specificity and affinity are encoded in the probability of cryptic pocket opening in myosin motor domains A Meller, JM Lotthammer, LG Smith, B Novak, LA Lee, CC Kuhn, ... Elife 12, e83602, 2023 | 22 | 2023 |
| Wiley Interdiscip. Rev LG Smith, J Zhao, DH Mathews, DH Turner RNA 8, e1422, 2017 | 21 | 2017 |
| Chemically accurate relative folding stability of RNA hairpins from molecular simulations LG Smith, Z Tan, A Spasic, D Dutta, LA Salas-Estrada, A Grossfield, ... Journal of chemical theory and computation 14 (12), 6598-6612, 2018 | 16 | 2018 |
| PopShift: A Thermodynamically Sound Approach to Estimate Binding Free Energies by Accounting for Ligand-Induced Population Shifts from a Ligand-Free Markov State Model LG Smith, B Novak, M Osato, DL Mobley, GR Bowman Journal of Chemical Theory and Computation 20 (3), 1036-1050, 2024 | 5 | 2024 |
| Toward physics‐based precision medicine: Exploiting protein dynamics to design new therapeutics and interpret variants A Meller, D Kelly, LG Smith, GR Bowman Protein Science 33 (3), e4902, 2024 | 3 | 2024 |
| SGLT2 inhibitors activate pantothenate kinase in the human heart N Forelli, D Eaton, J Patel, C Bowman, R Kawakami, I Kuzetsnov, K Li, ... bioRxiv, 2024.07. 26.605401, 2024 | 1 | 2024 |
| Drug specificity and affinity are encoded in the probability of cryptic pocket opening in myosin motor domains A Meller, JM Lotthammer, LG Smith, B Novak, LA Lee, CC Kuhn, ... bioRxiv, 2022.09. 05.506254, 2022 | 1 | 2022 |
| LOOS: A library and suite of tools for analyzing molecular dynamics simulations TD Romo, LG Smith, A Grossfield Biophysical Journal 123 (3), 424a-425a, 2024 | | 2024 |
| Single-molecule spectroscopy of Apolipoprotein E reveals a complex conformational ensemble MD Stuchell-Brereton, MI Zimmerman, JJ Miller, UL Mallimadugula, ... Biophysical Journal 122 (3), 329a, 2023 | | 2023 |
| Benchmarking a novel ensemble docking method LG Smith, B Novak, GR Bowman Biophysical Journal 122 (3), 183a, 2023 | | 2023 |
| Track: Integrating Techniques to Address Challenges in Protein Structural Biology Apolipoprotein E4 has extensive conformational heterogeneity in lipid free and bound forms M Stuchell-Brereton, M Zimmerman, J Miller, U Mallimadigula, J Cubuk, ... PROTEIN SCIENCE 32, 2023 | | 2023 |
| New ranking functions for adaptive sampling improve backtracking and pathfinding in complex landscapes LG Smith, MD Ward, MI Zimmerman, GR Bowman Biophysical Journal 121 (3), 275a, 2022 | | 2022 |
| Apolipoprotein E4 has extensive conformational heterogeneity in lipid free and bound forms MD Stuchell-Brereton, MI Zimmerman, JJ Miller, UL Mallimadugula, ... bioRxiv, 2022.02. 02.478828, 2022 | | 2022 |
| Capturing the Influence of Solvent and Neighboring Residues in a Fixed-Charge Force Field for RNA CE Cavender, LG Smith, A Grossfield, DH Mathews Biophysical Journal 118 (3), 68a, 2020 | | 2020 |
| Can Simulations be Recycled to Benchmark RNA Force Fields LG Smith, SD Kennedy, DH Turner, A Grossfield, DH Mathews Biophysical Journal 118 (3), 296a, 2020 | | 2020 |
| RNA Molecular Interactions Studied Through Simulation and Experiment LG Smith University of Rochester, 2020 | | 2020 |
| Exploring Hydrogen Bond Geometry in RNA with F-SAPT LG Smith, CE Cavender, A Grossfield, DH Mathews Biophysical Journal 116 (3), 143a, 2019 | | 2019 |
