Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 284 | 2021 |
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression ASE Cuomo, DD Seaton, DJ McCarthy, I Martinez, MJ Bonder, ... Nature communications 11 (1), 810, 2020 | 213 | 2020 |
Computational principles and challenges in single-cell data integration R Argelaguet, ASE Cuomo, O Stegle, JC Marioni Nature biotechnology 39 (10), 1202-1215, 2021 | 205 | 2021 |
Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation J Jerber, DD Seaton, ASE Cuomo, N Kumasaka, J Haldane, J Steer, ... Nature genetics 53 (3), 304-312, 2021 | 133 | 2021 |
Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes DJ McCarthy, R Rostom, Y Huang, DJ Kunz, P Danecek, MJ Bonder, ... Nature Methods 17 (4), 414-421, 2020 | 44 | 2020 |
Optimizing expression quantitative trait locus mapping workflows for single-cell studies ASE Cuomo, G Alvari, CB Azodi, Single-Cell eQTLGen Consortium, ... Genome biology 22 (1), 188, 2021 | 31 | 2021 |
Single-cell RNA-sequencing of peripheral blood mononuclear cells reveals widespread, context-specific gene expression regulation upon pathogenic exposure R Oelen, DH de Vries, H Brugge, MG Gordon, M Vochteloo, ... Nature Communications 13 (1), 3267, 2022 | 22 | 2022 |
Single-cell genomics meets human genetics ASE Cuomo, A Nathan, S Raychaudhuri, DG MacArthur, JE Powell Nature Reviews Genetics, 1-15, 2023 | 15 | 2023 |
CellRegMap: a statistical framework for mapping context‐specific regulatory variants using scRNA‐seq ASE Cuomo, T Heinen, D Vagiaki, D Horta, JC Marioni, O Stegle Molecular Systems Biology 18 (8), e10663, 2022 | 13 | 2022 |
single-cell eQTLGen consortium, McCarthy DJ, Bonder MJ. Optimizing expression quantitative trait locus mapping workflows for single-cell studies ASE Cuomo, G Alvari, CB Azodi Genome Biol 22 (1), 188, 2021 | 7 | 2021 |
Sex-Specific Clinical and Genetic Factors Associated with Adverse Outcomes in Hypertrophic Cardiomyopathy A Butters, C Arnott, J Sweeting, B Claggett, A Cuomo, D Abrams, ... medRxiv, 2023.06. 17.23291422, 2023 | | 2023 |
Using single-cell RNA-seq to assess the effect of common genetic variants on gene expression during development A Cuomo University of Cambridge, 2020 | | 2020 |