| A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage‐specific barcode markers in microbial ecology T Stoeck, HW Breiner, S Filker, V Ostermaier, B Kammerlander, ... Environmental Microbiology 16 (2), 430-444, 2014 | 112 | 2014 |
| Microbial eukaryote life in the new hypersaline deep-sea basin Thetis A Stock, HW Breiner, M Pachiadaki, V Edgcomb, S Filker, V La Cono, ... Extremophiles 16, 21-34, 2012 | 98 | 2012 |
| Microbial eukaryote plankton communities of high‐mountain lakes from three continents exhibit strong biogeographic patterns S Filker, R Sommaruga, I Vila, T Stoeck Molecular Ecology 25 (10), 2286-2301, 2016 | 89 | 2016 |
| Perspectives from ten years of protist studies by high‐throughput metabarcoding L Santoferrara, F Burki, S Filker, R Logares, M Dunthorn, GB McManus Journal of Eukaryotic Microbiology 67 (5), 612-622, 2020 | 86 | 2020 |
| High diversity of protistan plankton communities in remote high mountain lakes in the European Alps and the Himalayan mountains B Kammerlander, HW Breiner, S Filker, R Sommaruga, B Sonntag, ... FEMS Microbiology Ecology 91 (4), fiv010, 2015 | 70 | 2015 |
| Comparing High‐throughput Platforms for Sequencing the V4 Region of SSU‐r DNA in Environmental Microbial Eukaryotic Diversity Surveys F Mahé, J Mayor, J Bunge, J Chi, T Siemensmeyer, T Stoeck, B Wahl, ... Journal of Eukaryotic Microbiology 62 (3), 338-345, 2015 | 62 | 2015 |
| Identification of osmoadaptive strategies in the halophile, heterotrophic ciliate Schmidingerothrix salinarum L Weinisch, S Kühner, R Roth, M Grimm, T Roth, DJA Netz, AJ Pierik, ... PLoS Biology 16 (1), e2003892, 2018 | 61 | 2018 |
| Improving eDNA‐based protist diversity assessments using networks of amplicon sequence variants D Forster, G Lentendu, S Filker, E Dubois, TA Wilding, T Stoeck Environmental Microbiology 21 (11), 4109-4124, 2019 | 50 | 2019 |
| Protistan diversity in a permanently stratified meromictic Lake (Lake a latsee, SW G ermany) A Oikonomou, S Filker, HW Breiner, T Stoeck Environmental microbiology 17 (6), 2144-2157, 2015 | 50 | 2015 |
| Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection A Stock, V Edgcomb, W Orsi, S Filker, HW Breiner, MM Yakimov, T Stoeck BMC microbiology 13, 1-15, 2013 | 47 | 2013 |
| Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds S Filker, A Gimmler, M Dunthorn, F Mahé, T Stoeck Extremophiles 19, 283-295, 2015 | 46 | 2015 |
| A comparison of different ciliate metabarcode genes as bioindicators for environmental impact assessments of salmon aquaculture D Forster, S Filker, R Kochems, HW Breiner, T Cordier, J Pawlowski, ... Journal of Eukaryotic Microbiology 66 (2), 294-308, 2019 | 43 | 2019 |
| Patterns and drivers of vertical distribution of the ciliate community from the surface to the abyssopelagic zone in the Western Pacific Ocean F Zhao, S Filker, K Xu, P Huang, S Zheng Frontiers in Microbiology 8, 2559, 2017 | 42 | 2017 |
| Novel active kinetoplastids associated with hypersaline anoxic basins in the Eastern Mediterranean deep-sea VP Edgcomb, W Orsi, HW Breiner, A Stock, S Filker, MM Yakimov, ... Deep Sea Research Part I: Oceanographic Research Papers 58 (10), 1040-1048, 2011 | 37 | 2011 |
| Morphology, ontogenesis and molecular phylogeny of Platynematum salinarum nov. spec., a new scuticociliate (Ciliophora, Scuticociliatia) from a solar saltern W Foissner, JH Jung, S Filker, J Rudolph, T Stoeck European Journal of Protistology 50 (2), 174-184, 2014 | 35 | 2014 |
| Transition boundaries for protistan species turnover in hypersaline waters of different biogeographic regions S Filker, D Forster, L Weinisch, M Mora‐Ruiz, B González, ME Farías, ... Environmental microbiology 19 (8), 3186-3200, 2017 | 34 | 2017 |
| Schmidingerothrix salinarum nov. spec. is the Molecular Sister of the Large Oxytrichid Clade (Ciliophora, Hypotricha) W Foissner, S Filker, T Stoeck Journal of eukaryotic Microbiology 61 (1), 61-74, 2014 | 33 | 2014 |
| Description of the Halophile Euplotes qatarensis nov. spec. (Ciliophora, Spirotrichea, Euplotida) Isolated from the Hypersaline Khor Al‐Adaid Lagoon in Qatar R Fotedar, T Stoeck, S Filker, JW Fell, S Agatha, M Al Marri, J Jiang Journal of Eukaryotic Microbiology 63 (5), 578-590, 2016 | 29 | 2016 |
| A fundamental difference between macrobiota and microbial eukaryotes: protistan plankton has a species maximum in the freshwater‐marine transition zone of the Baltic Sea S Filker, S Kühner, M Heckwolf, J Dierking, T Stoeck Environmental Microbiology 21 (2), 603-617, 2019 | 28 | 2019 |
| Microeukaryote communities exhibit phyla-specific distance-decay patterns and an intimate link between seawater and sediment habitats in the Western Pacific Ocean F Zhao, S Filker, K Xu, P Huang, S Zheng Deep Sea Research Part I: Oceanographic Research Papers 160, 103279, 2020 | 24 | 2020 |
