The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function D Warde-Farley, SL Donaldson, O Comes, K Zuberi, R Badrawi, P Chao, ... Nucleic acids research 38 (suppl_2), W214-W220, 2010 | 4113 | 2010 |
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010 | 2506 | 2010 |
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1768* | 2020 |
A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013 | 1512 | 2013 |
The human splicing code reveals new insights into the genetic determinants of disease HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ... Science 347 (6218), 1254806, 2015 | 1420 | 2015 |
Diversity and complexity in DNA recognition by transcription factors G Badis, MF Berger, AA Philippakis, S Talukder, AR Gehrke, SA Jaeger, ... Science 324 (5935), 1720-1723, 2009 | 1149 | 2009 |
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function S Mostafavi, D Ray, D Warde-Farley, C Grouios, Q Morris Genome biology 9, 1-15, 2008 | 1048 | 2008 |
The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 903 | 2020 |
GeneMANIA update 2018 M Franz, H Rodriguez, C Lopes, K Zuberi, J Montojo, GD Bader, Q Morris Nucleic acids research 46 (W1), W60-W64, 2018 | 873 | 2018 |
Dynamic modularity in protein interaction networks predicts breast cancer outcome IW Taylor, R Linding, D Warde-Farley, Y Liu, C Pesquita, D Faria, S Bull, ... Nature biotechnology 27 (2), 199-204, 2009 | 858 | 2009 |
Cytoscape Web: an interactive web-based network browser CT Lopes, M Franz, F Kazi, SL Donaldson, Q Morris, GD Bader Bioinformatics 26 (18), 2347-2348, 2010 | 819 | 2010 |
Exploration of essential gene functions via titratable promoter alleles S Mnaimneh, AP Davierwala, J Haynes, J Moffat, WT Peng, W Zhang, ... Cell 118 (1), 31-44, 2004 | 714 | 2004 |
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences MF Berger, G Badis, AR Gehrke, S Talukder, AA Philippakis, ... Cell 133 (7), 1266-1276, 2008 | 712 | 2008 |
High-density proximity mapping reveals the subcellular organization of mRNA-associated granules and bodies JY Youn, WH Dunham, SJ Hong, JDR Knight, M Bashkurov, GI Chen, ... Molecular cell 69 (3), 517-532. e11, 2018 | 656 | 2018 |
GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop J Montojo, K Zuberi, H Rodriguez, F Kazi, G Wright, SL Donaldson, ... Bioinformatics 26 (22), 2927-2928, 2010 | 654 | 2010 |
RBPDB: a database of RNA-binding specificities KB Cook, H Kazan, K Zuberi, Q Morris, TR Hughes Nucleic acids research 39 (suppl_1), D301-D308, 2010 | 593 | 2010 |
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling T Kislinger, B Cox, A Kannan, C Chung, P Hu, A Ignatchenko, MS Scott, ... Cell 125 (1), 173-186, 2006 | 553 | 2006 |
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins D Ray, H Kazan, ET Chan, LP Castillo, S Chaudhry, S Talukder, ... Nature biotechnology 27 (7), 667-670, 2009 | 534 | 2009 |
Probing microRNAs with microarrays: tissue specificity and functional inference T Babak, WEN Zhang, Q Morris, BJ Blencowe, TR Hughes Rna 10 (11), 1813-1819, 2004 | 499 | 2004 |
Using expression profiling data to identify human microRNA targets JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ... Nature methods 4 (12), 1045-1049, 2007 | 472 | 2007 |