| Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models MR Garvin, E T. Prates, M Pavicic, P Jones, BK Amos, A Geiger, MB Shah, ... Genome biology 21, 1-26, 2020 | 68 | 2020 |
| Genomic and Phenomic Screens for Flower Related RING Type Ubiquitin E3 Ligases in Arabidopsis M Pavicic, K Mouhu, F Wang, M Bilicka, E Chovanček, K Himanen Frontiers in Plant Science 8, 416, 2017 | 30 | 2017 |
| Potential pathogenicity determinants identified from structural proteomics of SARS-CoV and SARS-CoV-2 ET Prates, MR Garvin, M Pavicic, P Jones, M Shah, O Demerdash, ... Molecular biology and evolution 38 (2), 702-715, 2021 | 28 | 2021 |
| Image-Based Methods to Score Fungal Pathogen Symptom Progression and Severity in Excised Arabidopsis Leaves M Pavicic, K Overmyer, AU Rehman, P Jones, D Jacobson, K Himanen Plants 10 (1), 158, 2021 | 25 | 2021 |
| Chlorophyll fluorescence imaging for monitoring effects of Heterobasidion parviporum small secreted protein induced cell death and in planta defense gene expression Z Wen, T Raffaello, Z Zeng, M Pavicic, FO Asiegbu Fungal genetics and biology 126, 37-49, 2019 | 14 | 2019 |
| A multi-ancestry genetic study of pain intensity in 598,339 veterans S Toikumo, R Vickers-Smith, Z Jinwala, H Xu, D Saini, EE Hartwell, ... Nature medicine 30 (4), 1075-1084, 2024 | 13 | 2024 |
| Functional immune deficiency syndrome via intestinal infection in COVID-19 ET Prates, MR Garvin, M Pavicic, P Jones, M Shah, C Alvarez, D Kainer, ... BioRxiv, 2020 | 10 | 2020 |
| Rapid expansion of SARS-CoV-2 variants of concern is a result of adaptive epistasis MR Garvin, ET Prates, J Romero, A Cliff, MG JGF, M Pickholz, M Pavicic, ... | 9* | 2021 |
| High throughput in vitro seed germination screen identified new ABA responsive RING-type ubiquitin E3 ligases in Arabidopsis thaliana M Pavicic, F Wang, K Mouhu, K Himanen Plant Cell, Tissue and Organ Culture (PCTOC) 139 (3), 563-575, 2019 | 8 | 2019 |
| PACER: a novel 3D plant cell wall model for the analysis of non-catalytic and enzymatic responses M Monschein, E Jurak, T Paasela, T Koitto, V Lambauer, M Pavicic, ... Biotechnology for biofuels and bioproducts 15 (1), 30, 2022 | 5 | 2022 |
| Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa J Lagergren, M Pavicic, HB Chhetri, LM York, D Hyatt, D Kainer, ... Plant Phenomics 5, 0072, 2023 | 4 | 2023 |
| Image-based time series analysis to establish differential disease progression for two Fusarium head blight pathogens in oat spikelets with variable resistance M Pavicic, K Mouhu, J Hautsalo, D Jacobson, M Jalli, K Himanen Frontiers in plant science 14, 1126717, 2023 | 4 | 2023 |
| Digging deeper into GWAS signal using GRIN implicates additional genes contributing to suicidal behavior KA Sullivan, M Lane, M Cashman, JI Miller, M Pavicic, AM Walker, A Cliff, ... medRxiv, 2022.04. 20.22273895, 2022 | 4 | 2022 |
| Confronting the COVID-19 pandemic with systems biology ET Prates, MR Garvin, M Pavicic, P Jones, M Shah, C Alvarez, D Kainer, ... bioRxiv, 2020.04. 06.028712, 2020 | 4 | 2020 |
| Using iterative random forest to find geospatial environmental and Sociodemographic predictors of suicide attempts M Pavicic, AM Walker, KA Sullivan, J Lagergren, A Cliff, J Romero, ... Frontiers in psychiatry 14, 1178633, 2023 | 3 | 2023 |
| MENTOR: multiplex embedding of networks for team-based omics research KA Sullivan, JI Miller, A Townsend, M Morgan, M Lane, M Pavicic, M Shah, ... bioRxiv, 2024 | 2 | 2024 |
| RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species D Kainer, M Lane, KA Sullivan, JI Miller, M Cashman, M Morgan, A Cliff, ... bioRxiv, 2024.07. 17.603975, 2024 | 2 | 2024 |
| Analyses of GWAS signal using GRIN identify additional genes contributing to suicidal behavior KA Sullivan, M Lane, M Cashman, JI Miller, M Pavicic, AM Walker, A Cliff, ... Communications Biology 7 (1), 1360, 2024 | 1 | 2024 |
| Transcriptomic Analysis Reveals Novel Regulators of the Scots Pine Stilbene Pathway T Paasela, KJ Lim, M Pavicic, A Harju, M Venäläinen, L Paulin, P Auvinen, ... Plant and Cell Physiology 64 (10), 1204-1219, 2023 | 1 | 2023 |
| Few-shot leaf segmentation J Lagergren, M Pavicic, HB Chhetri, LM York, D Hyatt, D Kainer, ... Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), 2023 | 1 | 2023 |
