Mass cytometry imaging for the study of human diseases—applications and data analysis strategies H Baharlou, NP Canete, AL Cunningham, AN Harman, E Patrick Frontiers in immunology 10, 2657, 2019 | 169 | 2019 |
Identification of HIV transmitting CD11c+ human epidermal dendritic cells KM Bertram, RA Botting, H Baharlou, JW Rhodes, H Rana, JD Graham, ... Nature communications 10 (1), 2759, 2019 | 87 | 2019 |
Phenotypic and functional consequences of different isolation protocols on skin mononuclear phagocytes RA Botting, KM Bertram, H Baharlou, KJ Sandgren, J Fletcher, ... Journal of Leucocyte Biology 101 (6), 1393-1403, 2017 | 56 | 2017 |
Langerhans cells and sexual transmission of HIV and HSV RA Botting, H Rana, KM Bertram, JW Rhodes, H Baharlou, N Nasr, ... Reviews in Medical Virology 27 (2), e1923, 2017 | 38 | 2017 |
Human anogenital monocyte-derived dendritic cells and langerin+ cDC2 are major HIV target cells JW Rhodes, RA Botting, KM Bertram, EE Vine, H Rana, H Baharlou, ... Nature Communications 12 (1), 2147, 2021 | 36 | 2021 |
spicyR: spatial analysis of in situ cytometry data in R NP Canete, SS Iyengar, JT Ormerod, H Baharlou, AN Harman, E Patrick Bioinformatics 38 (11), 3099-3105, 2022 | 30 | 2022 |
Plasmacytoid dendritic cells have divergent effects on HIV infection of initial target cells and induce a pro-retention phenotype O Tong, G Duette, TR O’Neil, CM Royle, H Rana, B Johnson, N Popovic, ... PLoS pathogens 17 (4), e1009522, 2021 | 15 | 2021 |
AFid: a tool for automated identification and exclusion of autofluorescent objects from microscopy images H Baharlou, NP Canete, KM Bertram, KJ Sandgren, AL Cunningham, ... Bioinformatics 37 (4), 559-567, 2021 | 14 | 2021 |
Optimal isolation protocols for examining and interrogating mononuclear phagocytes from human intestinal tissue CM Doyle, EE Vine, KM Bertram, H Baharlou, JW Rhodes, S Dervish, ... Frontiers in immunology 12, 727952, 2021 | 9 | 2021 |
Defining the landscape of human epidermal mononuclear phagocytes KM Bertram, TR O’Neil, EE Vine, H Baharlou, AL Cunningham, ... Immunity 56 (3), 459-460, 2023 | 6 | 2023 |
An in situ analysis pipeline for initial host-pathogen interactions reveals signatures of human colorectal HIV transmission H Baharlou, N Canete, EE Vine, K Hu, D Yuan, KJ Sandgren, KM Bertram, ... Cell Reports 40 (12), 2022 | 5 | 2022 |
Identification of HIV transmitting CD11c (+) human epidermal dendritic cells. Nat Commun. 2019; 10 (1): 2759 KM Bertram, RA Botting, H Baharlou, JW Rhodes, H Rana, JD Graham Epub 2019/06/23. https://doi. org/10.1038/s41467-019-10697-w PMID: 31227717, 0 | 5 | |
Identification of HIV-Transmitting Sub-Epithelial Mononuclear Phagocytes in Human Anogenital and Colorectal Tissues JW Rhodes, RA Botting, KM Bertram, H Rana, H Baharlou, ... bioRxiv, 2020.05. 26.117408, 2020 | 1 | 2020 |
Digital removal of autofluorescence from microscopy images H Baharlou, NP Canete, KM Bertram, KJ Sandgren, AL Cunningham, ... bioRxiv, 566315, 2019 | 1 | 2019 |
Innate immune cell activation by adjuvant AS01 in human lymph node explants is age-independent VV Stylianou, KM Bertram, EB Dunn, H Baharlou, DJ Terre, J Elhindi, ... The Journal of Clinical Investigation, 2024 | | 2024 |
Characterising plasmacytoid and myeloid AXL+ SIGLEC-6+ dendritic cell functions and their interactions with HIV FA Warner van Dijk, O Tong, TR O’Neil, KM Bertram, K Hu, H Baharlou, ... PLoS Pathogens 20 (6), e1012351, 2024 | | 2024 |
Herpes simplex virus spreads rapidly in human foreskin, partly driven by chemokine-induced redistribution of Nectin-1 on keratinocytes H Rana, NR Truong, B Johnson, H Baharlou, JJ Herbert, S Kandasamy, ... PLoS pathogens 20 (6), e1012267, 2024 | | 2024 |
OMIP‐103: A 35‐marker imaging mass cytometry panel for the co‐detection of HIV and immune cell populations in human formalin fixed paraffin embedded intestinal tissue K Hu, T O'Neil, N Canete, H Baharlou, A Harman Cytometry Part A, 2024 | | 2024 |
Imaging Mass Cytometry for In Situ Immune Profiling K Hu, A Harman, H Baharlou Flow Cytometry Protocols, 407-423, 2024 | | 2024 |
PPARγ downregulation in colonic CD8+ T cells results in epithelial barrier disruption in people with HIV on antiretroviral therapy U Das Adhikari, LM Froehle, AN Pipkin, H Baharlou, AH Linder, P Shah, ... bioRxiv, 2024.10. 02.616363, 2024 | | 2024 |