ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes AM Varani, P Siguier, E Gourbeyre, V Charneau, M Chandler Genome biology 12, 1-9, 2011 | 334 | 2011 |
Insertion Sequence IS26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition S He, AB Hickman, AM Varani, P Siguier, M Chandler, JP Dekker, F Dyda MBio 6 (3), 10.1128/mbio. 00762-15, 2015 | 270 | 2015 |
Everyman's guide to bacterial insertion sequences P Siguier, E Gourbeyre, A Varani, B Ton-Hoang, M Chandler Mobile DNA Iii, 555-590, 2015 | 238* | 2015 |
Building the sugarcane genome for biotechnology and identifying evolutionary trends N De Setta, CB Monteiro-Vitorello, CJ Metcalfe, GMQ Cruz, LE Del Bem, ... BMC genomics 15, 1-18, 2014 | 143 | 2014 |
A Metagenomic Approach to Cyanobacterial Genomics DO Alvarenga, MF Fiore, AM Varani Frontiers in Microbiology, 2017 | 109 | 2017 |
The Family Bradyrhizobiaceae. U: The Prokaryotes: Alphaproteobacteria and Betaproteobacteria (Rosenberg E. I sur., Ur.) JA Marcondes De Souza, LM Carareto Alves, A de Mello Varani, ... Springer Verlag, Berlin, 2014 | 88* | 2014 |
The Family Rhizobiaceae EGML Lucia Maria Carrareto Alves, Jackson Antônio Marcondes de Souza ... The Prokaryotes: Alphaproteobacteria and Betaproteobacteria, 419-437, 2014 | 87* | 2014 |
Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle LN Lemos, JD Medeiros, F Dini‐Andreote, GR Fernandes, AM Varani, ... Molecular ecology 28 (18), 4259-4271, 2019 | 85 | 2019 |
Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments P Siguier, A Varani, J Perochon, M Chandler Mobile Genetic Elements: Protocols and Genomic Applications, 91-103, 2012 | 78 | 2012 |
The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in … LA Cauz-Santos, CF Munhoz, N Rodde, S Cauet, AA Santos, HA Penha, ... Frontiers in Plant Science 8, 334, 2017 | 76 | 2017 |
The role of prophage in plant-pathogenic bacteria AM Varani, CB Monteiro-Vitorello, HI Nakaya, MA Van Sluys Annual review of phytopathology 51, 429-451, 2013 | 76 | 2013 |
The IS6 family, a clinically important group of insertion sequences including IS26 A Varani, S He, P Siguier, K Ross, M Chandler Mobile Dna 12, 1-18, 2021 | 73 | 2021 |
TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis CM Ross K, Varani AM, Snesrud E, Huang H, Alvarenga DO, Zhang J, Wu C, McGann P mBio 12 (Number 5), e02060-21, 2021 | 73* | 2021 |
Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism WC Lima, ACM Paquola, AM Varani, MA Van Sluys, CFM Menck FEMS microbiology letters 281 (1), 87-97, 2008 | 68 | 2008 |
Xylella and Xanthomonas Mobil'omics CB Monteiro-Vitorello, MC De Oliveira, MM Zerillo, AM Varani, E Civerolo, ... Omics: a journal of integrative biology 9 (2), 146-159, 2005 | 66 | 2005 |
Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation A de Mello Varani, RC Souza, HI Nakaya, WC de Lima, ... PLoS One 3 (12), e4059, 2008 | 64 | 2008 |
Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing JPF Fernanda Almeida , Amanda Aparecida Seribelli, Marta Inês Cazentini ... PLoS ONE 13 ((8)e0201882), 16, 2018 | 63* | 2018 |
NAD biosynthesis evolution in bacteria: lateral gene transfer of kynurenine pathway in Xanthomonadales and Flavobacteriales WC Lima, AM Varani, CFM Menck Molecular biology and evolution 26 (2), 399-406, 2009 | 61 | 2009 |
Mechanisms of evolution in high-consequence drug resistance plasmids S He, M Chandler, AM Varani, AB Hickman, JP Dekker, F Dyda MBio 7 (6), 10.1128/mbio. 01987-16, 2016 | 59 | 2016 |
The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the … SR Silva, YCA Diaz, HA Penha, DG Pinheiro, CC Fernandes, ... PLoS One 11 (10), e0165176, 2016 | 57 | 2016 |