VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016 | 8038* | 2016 |
RNAmmer: consistent and rapid annotation of ribosomal RNA genes K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery Nucleic Acids Research 35 (9), 3100-3108, 2007 | 5925 | 2007 |
Swarm: robust and fast clustering method for amplicon-based studies F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn PeerJ 2, 593, 2014 | 861* | 2014 |
DNA repair in mammalian cells: Base excision repair: the long and short of it AB Robertson, A Klungland, T Rognes, I Leiros Cellular and molecular life sciences 66, 981-993, 2009 | 834 | 2009 |
Swarm v2: highly-scalable and high-resolution amplicon clustering F Mahé, T Rognes, C Quince, C De Vargas, M Dunthorn PeerJ 3, e1420, 2015 | 536* | 2015 |
Opposite base‐dependent reactions of a human base excision repair enzyme on DNA containing 7, 8‐dihydro‐8‐oxoguanine and abasic sites M Bjørås, L Luna, B Johnsen, E Hoff, T Haug, T Rognes, E Seeberg The EMBO journal, 1997 | 406 | 1997 |
Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8‐oxoguanine and other oxidation products in DNA I Morland, V Rolseth, L Luna, T Rognes, M Bjørås, E Seeberg Nucleic acids research 30 (22), 4926-4936, 2002 | 329 | 2002 |
Six-fold speed-up of Smith–Waterman sequence database searches using parallel processing on common microprocessors T Rognes, E Seeberg Bioinformatics 16 (8), 699-706, 2000 | 326 | 2000 |
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation T Rognes BMC Bioinformatics 12 (1), 221, 2011 | 272 | 2011 |
The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative … I Alseth, L Eide, M Pirovano, T Rognes, E Seeberg, M Bjørås Molecular and cellular biology, 1999 | 183 | 1999 |
Open-source sequence clustering methods improve the state of the art E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ... MSystems 1 (1), 10.1128/msystems. 00003-15, 2016 | 161 | 2016 |
Genome dynamics in major bacterial pathogens OH Ambur, T Davidsen, SA Frye, SV Balasingham, K Lagesen, T Rognes, ... FEMS microbiology reviews 33 (3), 453-470, 2009 | 135 | 2009 |
ALKBH1 is a histone H2A dioxygenase involved in neural differentiation R Ougland, D Lando, I Jonson, JA Dahl, MN Moen, LM Nordstrand, ... Stem cells 30 (12), 2672-2682, 2012 | 125 | 2012 |
Biased distribution of DNA uptake sequences towards genome maintenance genes T Davidsen, EA Rødland, K Lagesen, E Seeberg, T Rognes, T Tønjum Nucleic acids research 32 (3), 1050-1058, 2004 | 113 | 2004 |
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches T Rognes Nucleic acids research 29 (7), 1647-1652, 2001 | 95 | 2001 |
Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA L Luna, M Bjørås, E Hoff, T Rognes, E Seeberg Mutation Research/DNA Repair 460 (2), 95-104, 2000 | 90 | 2000 |
Characterization of novel mutations in the catalytic domain of the PCSK9 gene J Cameron, ØL Holla, JK Laerdahl, MA Kulseth, T Ranheim, T Rognes, ... Journal of internal medicine 263 (4), 420-431, 2008 | 87 | 2008 |
Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V A Moe, J Ringvoll, LM Nordstrand, L Eide, M Bjørås, E Seeberg, ... Nucleic acids research 31 (14), 3893-3900, 2003 | 86 | 2003 |
Determination of optimal local sequence alignment similarity score T Rognes US Patent 7,917,302, 2011 | 85 | 2011 |
Mice lacking Alkbh1 display sex-ratio distortion and unilateral eye defects LM Nordstrand, J Svärd, E Larsen, A Nilsen, R Ougland, K Furu, GF Lien, ... PLoS One 5 (11), e13827, 2010 | 78 | 2010 |