OPTIMIZER: a web server for optimizing the codon usage of DNA sequences P Puigbo, E Guzmán, A Romeu, S Garcia-Vallvé Nucleic acids research 35 (suppl_2), W126-W131, 2007 | 740 | 2007 |
CAIcal: a combined set of tools to assess codon usage adaptation P Puigbò, IG Bravo, S Garcia-Vallve Biology direct 3, 1-8, 2008 | 501 | 2008 |
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation‐specific genes MY Galperin, SL Mekhedov, P Puigbo, S Smirnov, YI Wolf, DJ Rigden Environmental microbiology 14 (11), 2870-2890, 2012 | 290 | 2012 |
Phylogenomics of prokaryotic ribosomal proteins N Yutin, P Puigbò, EV Koonin, YI Wolf PloS one 7 (5), e36972, 2012 | 267 | 2012 |
Search for a ‘Tree of Life’in the thicket of the phylogenetic forest P Puigbò, YI Wolf, EV Koonin Journal of biology 8, 59, 2009 | 261 | 2009 |
Six-week endurance exercise alters gut metagenome that is not reflected in systemic metabolism in over-weight women E Munukka, JP Ahtiainen, P Puigbó, S Jalkanen, K Pahkala, A Keskitalo, ... Frontiers in microbiology 9, 2323, 2018 | 203 | 2018 |
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes P Puigbò, AE Lobkovsky, DM Kristensen, YI Wolf, EV Koonin BMC biology 12, 1-19, 2014 | 200 | 2014 |
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI) P Puigbò, IG Bravo, S Garcia-Vallvé BMC bioinformatics 9, 1-7, 2008 | 196 | 2008 |
The tree and net components of prokaryote evolution P Puigbo, YI Wolf, EV Koonin Genome biology and evolution 2, 745-756, 2010 | 154 | 2010 |
Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy SR Das, SE Hensley, A David, L Schmidt, JS Gibbs, P Puigbò, WL Ince, ... Proceedings of the National Academy of Sciences 108 (51), E1417-E1422, 2011 | 153 | 2011 |
TOPD/FMTS: a new software to compare phylogenetic trees P Puigbò, S Garcia-Vallvé, JO McInerney Bioinformatics 23 (12), 1556-1558, 2007 | 144 | 2007 |
Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain SR Das, P Puigbò, SE Hensley, DE Hurt, JR Bennink, JW Yewdell PLOS pathogens 6 (11), e1001211, 2010 | 125 | 2010 |
Classification of the glyphosate target enzyme (5-enolpyruvylshikimate-3-phosphate synthase) for assessing sensitivity of organisms to the herbicide L Leino, T Tall, M Helander, I Saloniemi, K Saikkonen, S Ruuskanen, ... Journal of Hazardous Materials 408, 124556, 2021 | 95 | 2021 |
HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection P Puigbo, A Romeu, S Garcia-Vallve Nucleic acids research 36 (suppl_1), D524-D527, 2007 | 95 | 2007 |
Inevitability of genetic parasites J Iranzo, P Puigbò, AE Lobkovsky, YI Wolf, EV Koonin Genome biology and evolution 8 (9), 2856-2869, 2016 | 93 | 2016 |
RCDI/eRCDI: a web-server to estimate codon usage deoptimization P Puigbò, L Aragonès, S Garcia-Vallvé BMC research notes 3, 1-4, 2010 | 73 | 2010 |
DendroUPGMA: a dendrogram construction utility S Garcia-Vallvé, P Puigbo Universitat Rovira i Virgili, 1-14, 2009 | 66 | 2009 |
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134 JM González, J Pinhassi, B Fernández-Gómez, M Coll-Lladó, ... Applied and Environmental Microbiology 77 (24), 8676-8686, 2011 | 63 | 2011 |
Ecosystem consequences of herbicides: the role of microbiome S Ruuskanen, B Fuchs, R Nissinen, P Puigbò, M Rainio, K Saikkonen, ... Trends in ecology & evolution 38 (1), 35-43, 2023 | 62 | 2023 |
Seeing the Tree of Life behind the phylogenetic forest P Puigbò, YI Wolf, EV Koonin BMC biology 11, 1-3, 2013 | 53 | 2013 |