| Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies MS Seaman, H Janes, N Hawkins, LE Grandpre, C Devoy, A Giri, ... Journal of virology 84 (3), 1439-1452, 2010 | 741 | 2010 |
| Breadth of human immunodeficiency virus-specific neutralizing activity in sera: clustering analysis and association with clinical variables NA Doria-Rose, RM Klein, MG Daniels, S O'Dell, M Nason, A Lapedes, ... Journal of virology 84 (3), 1631-1636, 2010 | 401 | 2010 |
| Founder effects in the assessment of HIV polymorphisms and HLA allele associations T Bhattacharya, M Daniels, D Heckerman, B Foley, N Frahm, C Kadie, ... science 315 (5818), 1583-1586, 2007 | 308 | 2007 |
| HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC N Wood, T Bhattacharya, BF Keele, E Giorgi, M Liu, B Gaschen, ... PLoS pathogens 5 (5), e1000414, 2009 | 220 | 2009 |
| Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1 ZL Brumme, CJ Brumme, D Heckerman, BT Korber, M Daniels, J Carlson, ... PLoS pathogens 3 (7), e94, 2007 | 203 | 2007 |
| Definition of the viral targets of protective HIV-1-specific T cell responses B Mothe, A Llano, J Ibarrondo, M Daniels, C Miranda, J Zamarreño, ... Journal of translational medicine 9, 1-20, 2011 | 192 | 2011 |
| HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load CM Rousseau, MG Daniels, JM Carlson, C Kadie, H Crawford, ... Journal of virology 82 (13), 6434-6446, 2008 | 168 | 2008 |
| Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections S Gnanakaran, T Bhattacharya, M Daniels, BF Keele, PT Hraber, ... PLoS pathogens 7 (9), e1002209, 2011 | 160 | 2011 |
| Scaling molecular dynamics beyond 100,000 processor cores for large‐scale biophysical simulations J Jung, W Nishima, M Daniels, G Bascom, C Kobayashi, A Adedoyin, ... Journal of computational chemistry 40 (21), 1919-1930, 2019 | 139 | 2019 |
| HIV-1 subtype and circulating recombinant form (CRF) reference sequences, 2005 T Leitner, B Korber, M Daniels, C Calef, B Foley HIV sequence compendium 2005, 41-48, 2005 | 134 | 2005 |
| Human leukocyte antigen–associated sequence polymorphisms in hepatitis C virus reveal reproducible immune responses and constraints on viral evolution J Timm, B Li, MG Daniels, T Bhattacharya, LL Reyor, R Allgaier, ... Hepatology 46 (2), 339-349, 2007 | 123 | 2007 |
| Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases IM Berry, R Ribeiro, M Kothari, G Athreya, M Daniels, HY Lee, W Bruno, ... Journal of virology 81 (19), 10625-10635, 2007 | 116 | 2007 |
| Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies S Gnanakaran, MG Daniels, T Bhattacharya, AS Lapedes, A Sethi, M Li, ... PLoS computational biology 6 (10), e1000955, 2010 | 107 | 2010 |
| Highly complex neutralization determinants on a monophyletic lineage of newly transmitted subtype C HIV-1 Env clones from India SS Kulkarni, A Lapedes, H Tang, S Gnanakaran, MG Daniels, M Zhang, ... Virology 385 (2), 505-520, 2009 | 102 | 2009 |
| Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120 S Gnanakaran, D Lang, M Daniels, T Bhattacharya, CA Derdeyn, ... Journal of virology 81 (9), 4886-4891, 2007 | 86 | 2007 |
| A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity M Asmal, I Hellmann, W Liu, BF Keele, AS Perelson, T Bhattacharya, ... PloS one 6 (8), e23673, 2011 | 73 | 2011 |
| A coarse-grained model for synergistic action of multiple enzymes on cellulose A Asztalos, M Daniels, A Sethi, T Shen, P Langan, A Redondo, ... Biotechnology for Biofuels 5, 1-15, 2012 | 59 | 2012 |
| Autologous neutralizing antibodies to the transmitted/founder viruses emerge late after simian immunodeficiency virus SIVmac251 infection of rhesus monkeys WW Yeh, I Rahman, P Hraber, RT Coffey, D Nevidomskyte, A Giri, ... Journal of virology 84 (12), 6018-6032, 2010 | 42 | 2010 |
| Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120 JL Kirchherr, J Hamilton, X Lu, S Gnanakaran, M Muldoon, M Daniels, ... Virology 409 (2), 163-174, 2011 | 30 | 2011 |
| Genital tract sequestration of SIV following acute infection JB Whitney, PT Hraber, C Luedemann, EE Giorgi, MG Daniels, ... PLoS pathogens 7 (2), e1001293, 2011 | 28 | 2011 |
