The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014 | 3324 | 2014 |
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ... Genome biology 13, 1-18, 2012 | 2873 | 2012 |
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 1236 | 2019 |
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes N Segata, D Börnigen, XC Morgan, C Huttenhower Nature communications 4 (1), 2304, 2013 | 786 | 2013 |
Sequencing and beyond: integrating molecular'omics' for microbial community profiling EA Franzosa, T Hsu, A Sirota-Madi, A Shafquat, G Abu-Ali, XC Morgan, ... Nature Reviews Microbiology 13 (6), 360-372, 2015 | 717 | 2015 |
Chapter 12: Human microbiome analysis XC Morgan, C Huttenhower PLoS computational biology 8 (12), e1002808, 2012 | 702 | 2012 |
Relating the metatranscriptome and metagenome of the human gut EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ... Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014 | 667 | 2014 |
Gallicola T Ezaki Bergey's Manual of Systematics of Archaea and Bacteria, 1-3, 2015 | 579 | 2015 |
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission MG Rooks, P Veiga, LH Wardwell-Scott, T Tickle, N Segata, M Michaud, ... The ISME journal 8 (7), 1403-1417, 2014 | 416 | 2014 |
Computational meta'omics for microbial community studies N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ... Molecular systems biology 9 (1), 666, 2013 | 384 | 2013 |
Biodiversity and functional genomics in the human microbiome XC Morgan, N Segata, C Huttenhower Trends in genetics 29 (1), 51-58, 2013 | 343 | 2013 |
Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque K Yasuda, K Oh, B Ren, TL Tickle, EA Franzosa, LM Wachtman, AD Miller, ... Cell host & microbe 17 (3), 385-391, 2015 | 305 | 2015 |
Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes M Yassour, MY Lim, HS Yun, TL Tickle, J Sung, YM Song, K Lee, ... Genome medicine 8, 1-14, 2016 | 276 | 2016 |
bioBakery: a meta’omic analysis environment LJ McIver, G Abu-Ali, EA Franzosa, R Schwager, XC Morgan, L Waldron, ... Bioinformatics 34 (7), 1235-1237, 2018 | 273 | 2018 |
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease XC Morgan, B Kabakchiev, L Waldron, AD Tyler, TL Tickle, R Milgrom, ... Genome biology 16, 1-15, 2015 | 221 | 2015 |
Meta'omic analytic techniques for studying the intestinal microbiome XC Morgan, C Huttenhower Gastroenterology 146 (6), 1437-1448. e1, 2014 | 212 | 2014 |
Microbial biogeography of 925 geothermal springs in New Zealand JF Power, CR Carere, CK Lee, GLJ Wakerley, DW Evans, M Button, ... Nature communications 9 (1), 2876, 2018 | 189 | 2018 |
Diverse hydrogen production and consumption pathways influence methane production in ruminants C Greening, R Geier, C Wang, LC Woods, SE Morales, MJ McDonald, ... The ISME journal 13 (10), 2617-2632, 2019 | 179 | 2019 |
Experimental design and quantitative analysis of microbial community multiomics H Mallick, S Ma, EA Franzosa, T Vatanen, XC Morgan, C Huttenhower Genome biology 18, 1-16, 2017 | 175 | 2017 |
Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment J Kim, AA Bhinge, XC Morgan, VR Iyer Nature Methods 2 (1), 47-53, 2005 | 145 | 2005 |