| Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... Science translational medicine 13 (612), eabh2624, 2021 | 145 | 2021 |
| Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus RK Perez, MG Gordon, M Subramaniam, MC Kim, GC Hartoularos, S Targ, ... Science 376 (6589), eabf1970, 2022 | 136 | 2022 |
| Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis I Mandric, T Schwarz, A Majumdar, K Hou, L Briscoe, R Perez, ... Nature communications 11 (1), 5504, 2020 | 45 | 2020 |
| Optimal design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis I Mandric, T Schwarz, A Majumdar, R Perez, M Subramaniam, J Ye, ... American Society of Human Genetics, 2019 | 45 | 2019 |
| Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19: Anti-IFN antibodies in critical … MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... BioRxiv, 2021 | 26 | 2021 |
| Laminar differences in responses to naturalistic texture in macaque V1 and V2 CM Ziemba, RK Perez, J Pai, JG Kelly, LE Hallum, C Shooner, ... Journal of Neuroscience 39 (49), 9748-9756, 2019 | 15 | 2019 |
| Tensor decomposition reveals coordinated multicellular patterns of transcriptional variation that distinguish and stratify disease individuals J Mitchel, MG Gordon, RK Perez, E Biederstedt, R Bueno, CJ Ye, ... BioRxiv, 2022.02. 16.480703, 2022 | 8 | 2022 |
| Cloudpred: Predicting patient phenotypes from single-cell rna-seq B He, M Thomson, M Subramaniam, R Perez, CJ Ye, J Zou PACIFIC SYMPOSIUM ON BIOCOMPUTING 2022, 337-348, 2021 | 8 | 2021 |
| Selectivity of contextual modulation in macaque V1 and V2 CM Ziemba, RK Perez, EP Simoncelli, JA Movshon Annual Meeting Society for Neuroscience, 2017 | 6 | 2017 |
| CSC software corrects off-target mediated gRNA depletion in CRISPR-Cas9 essentiality screens AR Perez, L Sala, RK Perez, JA Vidigal Nature Communications 12 (1), 6461, 2021 | 4 | 2021 |
| Uncovering context-specific genetic-regulation of gene expression from single-cell RNA-sequencing using latent-factor models BJ Strober, K Tayeb, J Popp, G Qi, MG Gordon, R Perez, CJ Ye, A Battle bioRxiv, 2022.12. 22.521678, 2022 | 2 | 2022 |
| Computational oncology RK Perez, R Kang, R Chen, JG Castellanos, AR Milewski, AR Perez Journal of oncopathology and clinical research 2 (1), 2018 | 2 | 2018 |
| Author Correction: CSC software corrects off-target mediated gRNA depletion in CRISPR-Cas9 essentiality screens AR Perez, L Sala, RK Perez, JA Vidigal Nature Communications 13, 2022 | 1 | 2022 |
| Anaesthesiologists as translational scientists JG Castellanos, AR Perez, RK Perez British Journal of Anaesthesia 124 (4), 373-376, 2020 | 1 | 2020 |
| Computational correction of off-targeting for CRISPR-Cas9 essentiality screens AR Perez, L Sala, RK Perez, JA Vidigal bioRxiv, 809970, 2019 | 1 | 2019 |
| Advent of CRISPR based immunotherapy in hematologic malignancies RK Perez, R Chen, R Kang, AR Perez Journal of oncopathology and clinical research 2 (1), 2018 | 1 | 2018 |
| A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling JA Hackney, H Shivram, J Vander Heiden, C Overall, L Orozco, X Gao, ... Iscience 26 (10), 2023 | | 2023 |
| CSC software corrects off-target mediated gRNA depletion in CRISPR-Cas9 essentiality screens (vol 12, pg 6461, 2021) AR Perez, L Sala, RK Perez, JA Vidigal NATURE COMMUNICATIONS 13 (1), 2022 | | 2022 |
| A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling (preprint) JA Hackney, H Shivram, J Vander Heiden, C Overall, L Orozco, X Gao, ... | | 2022 |
| Correction of Off-Targeting in CRISPR Screens Uncovers Genetic Dependencies in Melanoma Cells AR Perez, L Sala, RK Perez, V Joana A Genome Engineering: Frontiers of CRISPR-Cas, Cold Spring Harbor Laboratory, 2019 | | 2019 |
