| Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation NK Lee, AN Kapanidis, Y Wang, X Michalet, J Mukhopadhyay, RH Ebright, ... Biophysical journal 88 (4), 2939-2953, 2005 | 573 | 2005 |
| Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex V Mekler, E Kortkhonjia, J Mukhopadhyay, J Knight, A Revyakin, ... Cell 108 (5), 599-614, 2002 | 353 | 2002 |
| The RNA polymerase “switch region” is a target for inhibitors J Mukhopadhyay, K Das, S Ismail, D Koppstein, M Jang, B Hudson, ... Cell 135 (2), 295-307, 2008 | 275 | 2008 |
| Translocation of σ70 with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA J Mukhopadhyay, AN Kapanidis, V Mekler, E Kortkhonjia, YW Ebright, ... Cell 106 (4), 453-463, 2001 | 257 | 2001 |
| Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel J Mukhopadhyay, E Sineva, J Knight, RM Levy, RH Ebright Molecular cell 14 (6), 739-751, 2004 | 253 | 2004 |
| Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot MJ Bayro, J Mukhopadhyay, GVT Swapna, JY Huang, LC Ma, E Sineva, ... Journal of the American Chemical Society 125 (41), 12382-12383, 2003 | 239 | 2003 |
| Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation S Tuske, SG Sarafianos, X Wang, B Hudson, E Sineva, J Mukhopadhyay, ... Cell 122 (4), 541-552, 2005 | 236 | 2005 |
| New target for inhibition of bacterial RNA polymerase:‘switch region’ A Srivastava, M Talaue, S Liu, D Degen, RY Ebright, E Sineva, ... Current opinion in microbiology 14 (5), 532-543, 2011 | 199 | 2011 |
| Retention of transcription initiation factor σ70 in transcription elongation: single-molecule analysis AN Kapanidis, E Margeat, TA Laurence, S Doose, SO Ho, ... Molecular cell 20 (3), 347-356, 2005 | 180 | 2005 |
| Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes E Margeat, AN Kapanidis, P Tinnefeld, Y Wang, J Mukhopadhyay, ... Biophysical journal 90 (4), 1419-1431, 2006 | 159 | 2006 |
| Systematic structure-activity analysis of microcin J25 O Pavlova, J Mukhopadhyay, E Sineva, RH Ebright, K Severinov Journal of Biological Chemistry 283 (37), 25589-25595, 2008 | 138 | 2008 |
| The σ70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter BE Nickels, J Mukhopadhyay, SJ Garrity, RH Ebright, A Hochschild Nature structural & molecular biology 11 (6), 544-550, 2004 | 102 | 2004 |
| Polyphosphate kinase 1, a central node in the stress response network of Mycobacterium tuberculosis, connects the two-component systems MprAB and SenX3 … S Sanyal, SK Banerjee, R Banerjee, J Mukhopadhyay, M Kundu Microbiology 159 (Pt_10), 2074-2086, 2013 | 59 | 2013 |
| Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function J Mukhopadhyay, V Mekler, E Kortkhonjia, AN Kapanidis, YW Ebright, ... Methods in enzymology 371, 144-159, 2003 | 55 | 2003 |
| Optimization of recombinant Mycobacterium tuberculosis RNA polymerase expression and purification R Banerjee, P Rudra, RK Prajapati, S Sengupta, J Mukhopadhyay Tuberculosis 94 (4), 397-404, 2014 | 49 | 2014 |
| Distance-restrained docking of rifampicin and rifamycin SV to RNA polymerase using systematic FRET measurements: developing benchmarks of model quality and reliability JL Knight, V Mekler, J Mukhopadhyay, RH Ebright, RM Levy Biophysical Journal 88 (2), 925-938, 2005 | 43 | 2005 |
| Mode of action of a designed antimicrobial peptide: high potency against Cryptococcus neoformans A Datta, V Yadav, A Ghosh, J Choi, D Bhattacharyya, RK Kar, H Ilyas, ... Biophysical journal 111 (8), 1724-1737, 2016 | 39 | 2016 |
| Functional roles of the two cyclic AMP-dependent forms of cyclic AMP receptor protein from Escherichia coli J Mukhopadhyay, R Sur, P Parrack FEBS letters 453 (1-2), 215-218, 1999 | 38 | 1999 |
| MtrA, an essential response regulator of the MtrAB two-component system, regulates the transcription of resuscitation-promoting factor B of Mycobacterium tuberculosis AK Sharma, A Chatterjee, S Gupta, R Banerjee, S Mandal, ... Microbiology 161 (Pt_6), 1271-1281, 2015 | 30 | 2015 |
| Bacillus subtilis δ factor functions as a transcriptional regulator by facilitating the open complex formation RK Prajapati, S Sengupta, P Rudra, J Mukhopadhyay Journal of Biological Chemistry 291 (3), 1064-1075, 2016 | 23 | 2016 |
