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Yu-An Chen
Yu-An Chen
Harvard Medical School; University of Texas at Austin
在 hms.harvard.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
4042020
Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer
A Färkkilä, DC Gulhan, J Casado, CA Jacobson, H Nguyen, ...
Nature communications 11 (1), 1-13, 2020
2232020
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ...
Nature methods 19 (3), 311-315, 2022
1412022
Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer
JR Lin, S Wang, S Coy, YA Chen, C Yapp, M Tyler, MK Nariya, CN Heiser, ...
Cell 186 (2), 363-381. e19, 2023
1192023
The spatial landscape of progression and immunoediting in primary melanoma at single cell resolution
AJ Nirmal, Z Maliga, T Vallius, B Quattrochi, AA Chen, CA Jacobson, ...
Cancer discovery 12 (6), 1518, 2022
1162022
A complementary palette of NanoCluster Beacons
JM Obliosca, MC Babin, C Liu, YL Liu, YA Chen, RA Batson, M Ganguly, ...
ACS nano 8 (10), 10150-10160, 2014
922014
Evolution of delayed resistance to immunotherapy in a melanoma responder
D Liu, JR Lin, EJ Robitschek, GG Kasumova, A Heyde, A Shi, A Kraya, ...
Nature medicine 27 (6), 985-992, 2021
812021
Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR
JL Muhlich, YA Chen, C Yapp, D Russell, S Santagata, PK Sorger
Bioinformatics 38 (19), 4613-4621, 2022
782022
Assessing metastatic potential of breast cancer cells based on EGFR dynamics
YL Liu, CK Chou, M Kim, R Vasisht, YA Kuo, P Ang, C Liu, EP Perillo, ...
Scientific reports 9 (1), 1-13, 2019
642019
Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer
R Rashid, G Gaglia, YA Chen, JR Lin, Z Du, Z Maliga, D Schapiro, C Yapp, ...
Scientific Data 6 (1), 1-10, 2019
512019
NanoCluster Beacons Enable Detection of a Single N6-Methyladenine
YA Chen, JM Obliosca, YL Liu, C Liu, ML Gwozdz, HC Yeh
Journal of the American Chemical Society 137 (33), 10476-10479, 2015
512015
MITI minimum information guidelines for highly multiplexed tissue images
D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ...
Nature methods 19 (3), 262-267, 2022
452022
High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers
JR Lin, YA Chen, D Campton, J Cooper, S Coy, C Yapp, JB Tefft, ...
Nature Cancer, 1-17, 2023
412023
NanoCluster Beacons as reporter probes in rolling circle enhanced enzyme activity detection
S Juul, JM Obliosca, C Liu, YL Liu, YA Chen, DM Imphean, BR Knudsen, ...
Nanoscale 7 (18), 8332-8337, 2015
382015
3D single-molecule tracking enables direct hybridization kinetics measurement in solution
C Liu, JM Obliosca, YL Liu, YA Chen, N Jiang, HC Yeh
Nanoscale 9 (17), 5664-5670, 2017
272017
UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues
C Yapp, E Novikov, WD Jang, T Vallius, YA Chen, M Cicconet, Z Maliga, ...
Communications Biology 5 (1), 1-13, 2022
262022
Narrative online guides for the interpretation of digital-pathology images and tissue-atlas data
R Rashid, YA Chen, J Hoffer, JL Muhlich, JR Lin, R Krueger, H Pfister, ...
Nature Biomedical Engineering 6 (5), 515-526, 2022
21*2022
Three-Dimensional Two-Color Dual-Particle Tracking Microscope for Monitoring DNA Conformational Changes and Nanoparticle Landings on Live Cells
YL Liu, EP Perillo, P Ang, M Kim, DT Nguyen, K Blocher, YA Chen, C Liu, ...
ACS nano 14 (7), 7927-7939, 2020
202020
Minerva: a light-weight, narrative image browser for multiplexed tissue images
J Hoffer, R Rashid, JL Muhlich, YA Chen, DPW Russell, J Ruokonen, ...
Journal of open source software 5 (54), 2020
192020
Scope2Screen: Focus+ Context Techniques for Pathology Tumor Assessment in Multivariate Image Data
J Jessup, R Krueger, S Warchol, J Hoffer, J Muhlich, CC Ritch, G Gaglia, ...
IEEE transactions on visualization and computer graphics 28 (1), 259-269, 2021
182021
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