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A bivalent chromatin structure marks key developmental genes in embryonic stem cells BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, ... Cell 125 (2), 315-326, 2006 | 6198 | 2006 |
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 5960 | 2007 |
Genome sequence, comparative analysis and haplotype structure of the domestic dog K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ... Nature 438 (7069), 803-819, 2005 | 3130 | 2005 |
The Ensembl genome database project T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, ... Nucleic acids research 30 (1), 38-41, 2002 | 1967 | 2002 |
The jalview java alignment editor M Clamp, J Cuff, SM Searle, GJ Barton Bioinformatics 20 (3), 426-427, 2004 | 1843 | 2004 |
JPred: a consensus secondary structure prediction server. JA Cuff, ME Clamp, AS Siddiqui, M Finlay, GJ Barton Bioinformatics (Oxford, England) 14 (10), 892-893, 1998 | 1298 | 1998 |
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 1257 | 2011 |
Application of multiple sequence alignment profiles to improve protein secondary structure prediction JA Cuff, GJ Barton Proteins: Structure, Function, and Bioinformatics 40 (3), 502-511, 2000 | 1045 | 2000 |
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction JA Cuff, GJ Barton Proteins: Structure, Function, and Bioinformatics 34 (4), 508-519, 1999 | 881 | 1999 |
Distinguishing protein-coding and noncoding genes in the human genome M Clamp, B Fry, M Kamal, X Xie, J Cuff, MF Lin, M Kellis, K Lindblad-Toh, ... Proceedings of the National Academy of Sciences 104 (49), 19428-19433, 2007 | 812 | 2007 |
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ... Nature 447 (7141), 167-177, 2007 | 784 | 2007 |
An overview of Ensembl E Birney, TD Andrews, P Bevan, M Caccamo, Y Chen, L Clarke, G Coates, ... Genome research 14 (5), 925-928, 2004 | 562 | 2004 |
Ensembl 2002: accommodating comparative genomics M Clamp, D Andrews, D Barker, P Bevan, G Cameron, Y Chen, L Clark, ... Nucleic Acids Research 31 (1), 38-42, 2003 | 292 | 2003 |
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ... Genome research 17 (6), 760-774, 2007 | 252 | 2007 |
Ensembl 2004 E Birney, D Andrews, P Bevan, M Caccamo, G Cameron, Y Chen, ... Nucleic acids research 32 (suppl_1), D468-D470, 2004 | 234 | 2004 |
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Broad Institute Sequencing Platform and Whole Genome Assembly Team. Baylor College of Medicine Human Genome Sequencing Center Sequencing Team. Genome Institute at Washington … K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 83 | 2011 |
Broad Institute Genome Sequencing Platform. Broad Institute Whole Genome Assembly Team Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ... Nature 447, 167-177, 2007 | 73* | 2007 |
The Ensembl computing architecture JA Cuff, GMP Coates, TJR Cutts, M Rae Genome research 14 (5), 971-975, 2004 | 41 | 2004 |