| Pyteomics 4.0: five years of development of a python proteomics framework LI Levitsky, JA Klein, MV Ivanov, MV Gorshkov Journal of proteome research 18 (2), 709-714, 2018 | 137 | 2018 |
| Microfluidic capillary electrophoresis–mass spectrometry for analysis of monosaccharides, oligosaccharides, and glycopeptides K Khatri, JA Klein, JR Haserick, DR Leon, CE Costello, ME McComb, ... Analytical chemistry 89 (12), 6645-6655, 2017 | 118 | 2017 |
| Integrated omics and computational glycobiology reveal structural basis for influenza A virus glycan microheterogeneity and host interactions K Khatri, JA Klein, MR White, OC Grant, N Leymarie, RJ Woods, ... Molecular & Cellular Proteomics 15 (6), 1895-1912, 2016 | 96 | 2016 |
| A review of methods for interpretation of glycopeptide tandem mass spectral data H Hu, K Khatri, J Klein, N Leymarie, J Zaia Glycoconjugate journal 33, 285-296, 2016 | 86 | 2016 |
| pymzML v2. 0: introducing a highly compressed and seekable gzip format M Kösters, J Leufken, S Schulze, K Sugimoto, J Klein, RP Zahedi, ... Bioinformatics 34 (14), 2513-2514, 2018 | 69 | 2018 |
| Comparative Lipid Profiling of the Cnidarian Aiptasia pallida and Its Dinoflagellate Symbiont TA Garrett, JL Schmeitzel, JA Klein, JJ Hwang, JA Schwarz PloS one 8 (3), e57975, 2013 | 60 | 2013 |
| Universal Spectrum Identifier for mass spectra EW Deutsch, Y Perez-Riverol, J Carver, S Kawano, L Mendoza, ... Nature methods 18 (7), 768-770, 2021 | 57 | 2021 |
| Deep sequencing of complex proteoglycans: a novel strategy for high coverage and site-specific identification of glycosaminoglycan-linked peptides JA Klein, L Meng, J Zaia Molecular & Cellular Proteomics 17 (8), 1578-1590, 2018 | 53 | 2018 |
| Application of network smoothing to glycan LC-MS profiling J Klein, L Carvalho, J Zaia Bioinformatics 34 (20), 3511-3518, 2018 | 51 | 2018 |
| Proteomics, glycomics, and glycoproteomics of matrisome molecules R Raghunathan, MK Sethi, JA Klein, J Zaia Molecular & Cellular Proteomics 18 (11), 2138-2148, 2019 | 45 | 2019 |
| Comparison of collisional and electron-based dissociation modes for middle-down analysis of multiply glycosylated peptides K Khatri, Y Pu, JA Klein, J Wei, CE Costello, C Lin, J Zaia Journal of the American Society for Mass Spectrometry 29 (6), 1075-1085, 2018 | 41 | 2018 |
| Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation K Khatri, JA Klein, J Zaia Analytical and bioanalytical chemistry 409, 607-618, 2017 | 40 | 2017 |
| Glypy: an open source glycoinformatics library J Klein, J Zaia Journal of proteome research 18 (9), 3532-3537, 2019 | 38 | 2019 |
| Complete molecular weight profiling of low-molecular weight heparins using size exclusion chromatography-ion suppressor-high-resolution mass spectrometry J Zaia, K Khatri, J Klein, C Shao, Y Sheng, R Viner Analytical chemistry 88 (21), 10654-10660, 2016 | 36 | 2016 |
| Glycomic and proteomic changes in aging brain nigrostriatal pathway R Raghunathan, NK Polinski, JA Klein, JD Hogan, C Shao, K Khatri, ... Molecular & Cellular Proteomics 17 (9), 1778-1787, 2018 | 35 | 2018 |
| Relative retention time estimation improves N-glycopeptide identifications by LC–MS/MS J Klein, J Zaia Journal of proteome research 19 (5), 2113-2121, 2020 | 30 | 2020 |
| Software for peak finding and elemental composition assignment for glycosaminoglycan tandem mass spectra JD Hogan, JA Klein, J Wu, P Chopra, GJ Boons, L Carvalho, C Lin, J Zaia Molecular & Cellular Proteomics 17 (7), 1448-1456, 2018 | 27 | 2018 |
| Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides J Wu, J Wei, JD Hogan, P Chopra, A Joshi, W Lu, J Klein, GJ Boons, C Lin, ... Journal of The American Society for Mass Spectrometry 29 (6), 1262-1272, 2018 | 26 | 2018 |
| Proteomics standards initiative at twenty years: current activities and future work EW Deutsch, JA Vizcaíno, AR Jones, PA Binz, H Lam, J Klein, ... Journal of proteome research 22 (2), 287-301, 2023 | 24 | 2023 |
| Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein D Chang, JA Klein, MR Nalehua, WE Hackett, J Zaia Analytical and bioanalytical chemistry 413, 7305-7318, 2021 | 22 | 2021 |
