Long noncoding RNAs and the genetics of cancer SW Cheetham, F Gruhl, JS Mattick, ME Dinger British journal of cancer 108 (12), 2419-2425, 2013 | 848 | 2013 |
Overcoming challenges and dogmas to understand the functions of pseudogenes SW Cheetham, GJ Faulkner, ME Dinger Nature Reviews Genetics 21 (3), 191-201, 2020 | 219 | 2020 |
LINE-1 evasion of epigenetic repression in humans FJ Sanchez-Luque, MJHC Kempen, P Gerdes, DB Vargas-Landin, ... Molecular cell 75 (3), 590-604. e12, 2019 | 135 | 2019 |
Nanopore sequencing enables comprehensive transposable element epigenomic profiling AD Ewing, N Smits, FJ Sanchez-Luque, J Faivre, PM Brennan, ... Molecular Cell 80 (5), 915-928. e5, 2020 | 131 | 2020 |
Cell-type-specific profiling of protein–DNA interactions without cell isolation using targeted DamID with next-generation sequencing OJ Marshall, TD Southall, SW Cheetham, AH Brand Nature protocols 11 (9), 1586-1598, 2016 | 124 | 2016 |
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes DK Gascoigne, SW Cheetham, PB Cattenoz, MB Clark, PP Amaral, ... Bioinformatics 28 (23), 3042-3050, 2012 | 92 | 2012 |
Targeted DamID reveals differential binding of mammalian pluripotency factors SW Cheetham, WH Gruhn, J van den Ameele, R Krautz, TD Southall, ... Development 145 (20), dev170209, 2018 | 49 | 2018 |
DamID as a versatile tool for understanding gene regulation GN Aughey, SW Cheetham, TD Southall Development 146 (6), dev173666, 2019 | 47 | 2019 |
Methylartist: tools for visualizing modified bases from nanopore sequence data SW Cheetham, M Kindlova, AD Ewing Bioinformatics 38 (11), 3109-3112, 2022 | 37 | 2022 |
Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome RL Troskie, Y Jafrani, TR Mercer, AD Ewing, GJ Faulkner, SW Cheetham Genome biology 22 (1), 146, 2021 | 33 | 2021 |
The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation CC Bell, PP Amaral, A Kalsbeek, GW Magor, KR Gillinder, P Tangermann, ... Scientific reports 6 (1), 26657, 2016 | 31 | 2016 |
RNA-DamID reveals cell-type-specific binding of roX RNAs at chromatin-entry sites SW Cheetham, AH Brand Nature structural & molecular biology 25 (1), 109-114, 2018 | 26 | 2018 |
Processed pseudogenes: A substrate for evolutionary innovation: Retrotransposition contributes to genome evolution by propagating pseudogene sequences with rich regulatory … RL Troskie, GJ Faulkner, SW Cheetham Bioessays 43 (11), 2100186, 2021 | 22 | 2021 |
High resolution temporal transcriptomics of mouse embryoid body development reveals complex expression dynamics of coding and noncoding loci BS Gloss, B Signal, SW Cheetham, F Gruhl, DC Kaczorowski, AC Perkins, ... Scientific reports 7 (1), 6731, 2017 | 16 | 2017 |
mRNA vaccine quality analysis using RNA sequencing HM Gunter, S Idrisoglu, S Singh, DJ Han, E Ariens, JR Peters, T Wong, ... Nature Communications 14 (1), 5663, 2023 | 12 | 2023 |
Insulin finds its niche SW Cheetham, AH Brand Science 340 (6134), 817-818, 2013 | 10 | 2013 |
Vasculature organotropism in drug delivery A Amruta, D Iannotta, SW Cheetham, T Lammers, J Wolfram Advanced Drug Delivery Reviews 201, 115054, 2023 | 9 | 2023 |
Reduced chromatin accessibility correlates with resistance to Notch activation J Van Den Ameele, R Krautz, SW Cheetham, APA Donovan, ... Nature communications 13 (1), 2210, 2022 | 9 | 2022 |
Freedom of expression: cell‐type‐specific gene profiling L Otsuki, SW Cheetham, AH Brand Wiley Interdisciplinary Reviews: Developmental Biology 3 (6), 429-443, 2014 | 9 | 2014 |
Single-molecule simultaneous profiling of DNA methylation and DNA-protein interactions with Nanopore-DamID SW Cheetham, YMA Jafrani, SB Andersen, N Jansz, M Kindlova, ... BioRxiv, 2021.08. 09.455753, 2021 | 8 | 2021 |