A circadian gene expression atlas in mammals: implications for biology and medicine R Zhang, NF Lahens, HI Ballance, ME Hughes, JB Hogenesch Proceedings of the National Academy of Sciences 111 (45), 16219-16224, 2014 | 2142 | 2014 |
JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets ME Hughes, JB Hogenesch, K Kornacker Journal of biological rhythms 25 (5), 372-380, 2010 | 1029 | 2010 |
Extensive diversity of Ig-superfamily proteins in the immune system of insects FL Watson, R Püttmann-Holgado, F Thomas, DL Lamar, M Hughes, ... Science 309 (5742), 1874-1878, 2005 | 765 | 2005 |
Harmonics of circadian gene transcription in mammals ME Hughes, L DiTacchio, KR Hayes, C Vollmers, S Pulivarthy, JE Baggs, ... PLoS genetics 5 (4), e1000442, 2009 | 736 | 2009 |
MetaCycle: an integrated R package to evaluate periodicity in large scale data G Wu, RC Anafi, ME Hughes, K Kornacker, JB Hogenesch Bioinformatics 32 (21), 3351-3353, 2016 | 429 | 2016 |
Homophilic Dscam interactions control complex dendrite morphogenesis ME Hughes, R Bortnick, A Tsubouchi, P Bäumer, M Kondo, T Uemura, ... Neuron 54 (3), 417-427, 2007 | 306 | 2007 |
Guidelines for genome-scale analysis of biological rhythms ME Hughes, KC Abruzzi, R Allada, R Anafi, AB Arpat, G Asher, P Baldi, ... Journal of biological rhythms 32 (5), 380-393, 2017 | 233 | 2017 |
O-GlcNAc signaling entrains the circadian clock by inhibiting BMAL1/CLOCK ubiquitination MD Li, HB Ruan, ME Hughes, JS Lee, JP Singh, SP Jones, MN Nitabach, ... Cell metabolism 17 (2), 303-310, 2013 | 212 | 2013 |
Calcitonin gene-related peptide neurons mediate sleep-specific circadian output in Drosophila M Kunst, ME Hughes, D Raccuglia, M Felix, M Li, G Barnett, J Duah, ... Current Biology 24 (22), 2652-2664, 2014 | 205 | 2014 |
Deep sequencing the circadian and diurnal transcriptome of Drosophila brain ME Hughes, GR Grant, C Paquin, J Qian, MN Nitabach Genome research 22 (7), 1266-1281, 2012 | 190 | 2012 |
Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells AC Silver, A Arjona, ME Hughes, MN Nitabach, E Fikrig Brain, behavior, and immunity 26 (3), 407-413, 2012 | 185 | 2012 |
The circadian clock interacts with metabolic physiology to influence reproductive fitness K Xu, JR DiAngelo, ME Hughes, JB Hogenesch, A Sehgal Cell metabolism 13 (6), 639-654, 2011 | 177 | 2011 |
Machine learning helps identify CHRONO as a circadian clock component RC Anafi, Y Lee, TK Sato, A Venkataraman, C Ramanathan, IH Kavakli, ... PLoS biology 12 (4), e1001840, 2014 | 151 | 2014 |
Calcineurin negatively regulates TLR-mediated activation pathways YJ Kang, B Kusler, M Otsuka, M Hughes, N Suzuki, S Suzuki, WC Yeh, ... The Journal of Immunology 179 (7), 4598, 2007 | 130 | 2007 |
Brain-Specific Rescue of Clock Reveals System-Driven Transcriptional Rhythms in Peripheral Tissue ME Hughes, HK Hong, JL Chong, AA Indacochea, SS Lee, M Han, ... PLoS genetics 8 (7), e1002835, 2012 | 118 | 2012 |
Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues EE Terry, X Zhang, C Hoffmann, LD Hughes, SA Lewis, J Li, MJ Wallace, ... Elife 7, e34613, 2018 | 117 | 2018 |
High-resolution time course analysis of gene expression from pituitary M Hughes, L Deharo, SR Pulivarthy, J Gu, K Hayes, S Panda, ... Cold Spring Harbor Symposia on Quantitative Biology 72, 381-386, 2007 | 85 | 2007 |
Considerations for RNA-seq analysis of circadian rhythms J Li, GR Grant, JB Hogenesch, ME Hughes Methods in enzymology 551, 349-367, 2015 | 62 | 2015 |
Age-associated disruption of molecular clock expression in skeletal muscle of the spontaneously hypertensive rat M Miyazaki, E Schroder, SE Edelmann, ME Hughes, K Kornacker, ... PloS one 6 (11), e27168, 2011 | 60 | 2011 |
Tidal and diel orchestration of behaviour and gene expression in an intertidal mollusc Y Schnytzer, N Simon-Blecher, J Li, H Waldman Ben-Asher, ... Scientific Reports 8 (1), 4917, 2018 | 54 | 2018 |