| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2242 | 2007 |
| Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm X Li, S MacArthur, R Bourgon, D Nix, DA Pollard, VN Iyer, A Hechmer, ... PLoS biology 6 (2), e27, 2008 | 589 | 2008 |
| Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting DA Pollard, VN Iyer, AM Moses, MB Eisen PLoS genetics 2 (10), e173, 2006 | 435 | 2006 |
| Hypoglycaemia, liver necrosis and perinatal death in mice lacking all isoforms of phosphoinositide 3-kinase p85α DA Fruman, F Mauvais-Jarvis, DA Pollard, CM Yballe, D Brazil, ... Nature genetics 26 (3), 379-382, 2000 | 379 | 2000 |
| Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen PLoS computational biology 2 (10), e130, 2006 | 305 | 2006 |
| MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen Genome biology 5, 1-15, 2004 | 206 | 2004 |
| Benchmarking tools for the alignment of functional noncoding DNA DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen BMC bioinformatics 5, 1-17, 2004 | 169 | 2004 |
| Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments DA Pollard, AM Moses, VN Iyer, MB Eisen BMC bioinformatics 7, 1-14, 2006 | 63 | 2006 |
| Empowering statistical methods for cellular and molecular biologists DA Pollard, TD Pollard, KS Pollard Molecular Biology of the Cell 30 (12), 1359-1368, 2019 | 50 | 2019 |
| Design and construction of recombinant inbred lines DA Pollard Quantitative Trait Loci (QTL) Methods and Protocols, 31-39, 2012 | 47 | 2012 |
| Resistance to Germline RNA Interference in a Caenorhabditis elegans Wild Isolate Exhibits Complexity and Nonadditivity DA Pollard, MV Rockman G3: Genes, Genomes, Genetics 3 (6), 941-947, 2013 | 35 | 2013 |
| Whole genome phylogeny of the Drosophila melanogster species subgroup: Widespread discordance with species tree and evidence for incomplete lineage sorting DA Pollard, VN Iyer, AM Moses, MB Eisen PLoS Genet 2 (10), 2006 | 7 | 2006 |
| Correction: transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm X Li, S MacArthur, R Bourgon, D Nix, DA Pollard, VN Iyer, A Hechmer, ... PLoS Biology 6 (7), e190, 2008 | 4 | 2008 |
| Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains HT Chou, F Valencia, JC Alexander, AD Bell, D Deb, DA Pollard, ... Genetics 226 (1), iyad191, 2024 | 3 | 2024 |
| Diversification of small RNA pathways underlies germline RNAi incompetence in wild C. elegans strains HT Chou, F Valencia, JC Alexander, AD Bell, D Deb, DA Pollard, ... bioRxiv, 2021.08. 21.457212, 2021 | 3 | 2021 |
| Natural Genetic Variation Modifies Gene Expression Dynamics at the Protein Level During Pheromone Response in Saccharomyces cerevisiae DA Pollard, CK Asamoto, H Rahnamoun, AS Abendroth, SR Lee, ... bioRxiv, 090480, 2016 | 3 | 2016 |
| Disruption of a ∼23–24 nucleotide small RNA pathway elevates DNA damage responses in Tetrahymena thermophila SR Lee, DA Pollard, DF Galati, ML Kelly, B Miller, C Mong, MN Morris, ... Molecular Biology of the Cell 32 (15), 1335-1346, 2021 | 2 | 2021 |
| Natural variation in codon bias and mRNA folding strength interact synergistically to modify protein expression in Saccharomyces cerevisiae AN Wienecke, ML Barry, DA Pollard Genetics 224 (4), iyad113, 2023 | | 2023 |
| A simple mass-action model predicts protein timecourses from mRNA trajectories during a dynamic response in two strains of S. cerevisiae S Kuo, J Egertson, G Merrihew, M MacCoss, D Pollard, SA Rifkin bioRxiv, 805846, 2019 | | 2019 |
| A simple mass-action model predicts genome-wide protein timecourses from mRNA trajectories during a dynamic response in two strains of Saccharomyces cerevisiae S Kuo, JD Egertson, GE Merrihew, MJ MacCoss, DA Pollard, SA Rifkin | | 2019 |
