Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 14927 | 2019 |
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2240 | 2017 |
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases J Lloyd-Price, C Arze, AN Ananthakrishnan, M Schirmer, J Avila-Pacheco, ... Nature 569 (7758), 655-662, 2019 | 2002 | 2019 |
Dynamics of the human gut microbiome in inflammatory bowel disease J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ... Nature microbiology 2 (5), 1-7, 2017 | 1090 | 2017 |
Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 842 | 2018 |
Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 536 | 2018 |
Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome TV Maier, M Lucio, LH Lee, NC VerBerkmoes, CJ Brislawn, J Bernhardt, ... mBio 8 (5), e01343-17, 2017 | 280 | 2017 |
Gut microbial alterations associated with protection from autoimmune uveitis YK Nakamura, C Metea, L Karstens, M Asquith, H Gruner, C Moscibrocki, ... Investigative ophthalmology & visual science 57 (8), 3747-3758, 2016 | 173 | 2016 |
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Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome AM Snijders, SA Langley, YM Kim, CJ Brislawn, C Noecker, EM Zink, ... Nature microbiology 2 (2), 1-8, 2016 | 113 | 2016 |
Forfeiting the priority effect: turnover defines biofilm community succession CJ Brislawn, EB Graham, K Dana, P Ihardt, SJ Fansler, WB Chrisler, ... The ISME journal 13 (7), 1865-1877, 2019 | 96 | 2019 |
Genetic and metabolic links between the murine microbiome and memory JH Mao, YM Kim, YX Zhou, D Hu, C Zhong, H Chang, CJ Brislawn, ... Microbiome 8, 1-14, 2020 | 85 | 2020 |
Moleculo long-read sequencing facilitates assembly and genomic binning from complex soil metagenomes RA White III, EM Bottos, T Roy Chowdhury, JD Zucker, CJ Brislawn, ... Msystems 1 (3), 10.1128/msystems. 00045-16, 2016 | 67 | 2016 |
Selection, succession, and stabilization of soil microbial consortia EK Zegeye, CJ Brislawn, Y Farris, SJ Fansler, KS Hofmockel, JK Jansson, ... Msystems 4 (4), 10.1128/msystems. 00055-19, 2019 | 58 | 2019 |
Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania R Trexler, C Solomon, CJ Brislawn, JR Wright, A Rosenberger, ... Frontiers in Microbiology 5, 522, 2014 | 57 | 2014 |
Changes in microbial communities along redox gradients in polygonized A rctic wet tundra soils DA Lipson, TK Raab, M Parker, ST Kelley, CJ Brislawn, J Jansson Environmental microbiology reports 7 (4), 649-657, 2015 | 56 | 2015 |
Metaphenomic responses of a native prairie soil microbiome to moisture perturbations T Roy Chowdhury, JY Lee, EM Bottos, CJ Brislawn, RA White III, ... Msystems 4 (4), 10.1128/msystems. 00061-19, 2019 | 51* | 2019 |
Metagenomic analysis of subtidal sediments from polar and subpolar coastal environments highlights the relevance of anaerobic hydrocarbon degradation processes F Espínola, HM Dionisi, S Borglin, CJ Brislawn, JK Jansson, ... Microbial ecology 75, 123-139, 2018 | 35 | 2018 |
Trade-offs between microbiome diversity and productivity in a stratified microbial mat HC Bernstein, C Brislawn, RS Renslow, K Dana, B Morton, ... The ISME journal 11 (2), 405-414, 2017 | 33 | 2017 |
Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture N Khan, Y Maezato, RS McClure, CJ Brislawn, JM Mobberley, N Isern, ... Scientific reports 8 (1), 297, 2018 | 31 | 2018 |