The human phenotype ontology in 2021 S Köhler, M Gargano, N Matentzoglu, LC Carmody, D Lewis-Smith, ... Nucleic acids research 49 (D1), D1207-D1217, 2021 | 728 | 2021 |
COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning E Ong, MU Wong, A Huffman, Y He Frontiers in immunology 11, 1581, 2020 | 459 | 2020 |
Endoplasmic reticulum stress activates the inflammasome via NLRP3-and caspase-2-driven mitochondrial damage DN Bronner, BH Abuaita, X Chen, KA Fitzgerald, G Nuñez, Y He, XM Yin, ... Immunity 43 (3), 451-462, 2015 | 394 | 2015 |
The ontology for biomedical investigations A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ... PloS one 11 (4), e0154556, 2016 | 377 | 2016 |
Vaxign: the first web‐based vaccine design program for reverse vaccinology and applications for vaccine development Y He, Z Xiang, HLT Mobley BioMed Research International 2010 (1), 297505, 2010 | 367 | 2010 |
Modeling biomedical experimental processes with OBI RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ... Journal of biomedical semantics 1, 1-11, 2010 | 327 | 2010 |
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability AD Diehl, TF Meehan, YM Bradford, MH Brush, WM Dahdul, DS Dougall, ... Journal of biomedical semantics 7, 1-10, 2016 | 246 | 2016 |
Finding our way through phenotypes AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ... PLoS biology 13 (1), e1002033, 2015 | 232 | 2015 |
OntoFox: web-based support for ontology reuse Z Xiang, M Courtot, RR Brinkman, A Ruttenberg, Y He BMC research notes 3, 1-12, 2010 | 230 | 2010 |
Emerging vaccine informatics Y He, R Rappuoli, AS De Groot, RT Chen BioMed Research International 2010 (1), 218590, 2010 | 184 | 2010 |
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration E Ong, Z Xiang, B Zhao, Y Liu, Y Lin, J Zheng, C Mungall, M Courtot, ... Nucleic acids research 45 (D1), D347-D352, 2017 | 163 | 2017 |
Ontobee: A linked data server and browser for ontology terms. Z Xiang, C Mungall, A Ruttenberg, Y He ICBO, 2011 | 157 | 2011 |
Victors: a web-based knowledge base of virulence factors in human and animal pathogens S Sayers, L Li, E Ong, S Deng, G Fu, Y Lin, B Yang, S Zhang, Z Fa, ... Nucleic acids research 47 (D1), D693-D700, 2019 | 155 | 2019 |
Analyses of Brucella Pathogenesis, Host Immunity, and Vaccine Targets using Systems Biology and Bioinformatics Y He Frontiers in cellular and infection microbiology 2, 2, 2012 | 153 | 2012 |
CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis Y He, H Yu, E Ong, Y Wang, Y Liu, A Huffman, H Huang, J Beverley, J Hur, ... Scientific data 7 (1), 181, 2020 | 142 | 2020 |
Brucella melitensis Triggers Time-Dependent Modulation of Apoptosis and Down-Regulation of Mitochondrion-Associated Gene Expression in Mouse Macrophages Y He, S Reichow, S Ramamoorthy, X Ding, R Lathigra, JC Craig, ... Infection and immunity 74 (9), 5035-5046, 2006 | 136 | 2006 |
OAE: the ontology of adverse events Y He, S Sarntivijai, Y Lin, Z Xiang, A Guo, S Zhang, D Jagannathan, ... Journal of biomedical semantics 5, 1-13, 2014 | 135 | 2014 |
CLO: the cell line ontology S Sarntivijai, Y Lin, Z Xiang, TF Meehan, AD Diehl, UD Vempati, ... Journal of biomedical semantics 5, 1-10, 2014 | 123 | 2014 |
VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria J Li, C Tai, Z Deng, W Zhong, Y He, HY Ou Briefings in Bioinformatics 19 (4), 566-574, 2018 | 122 | 2018 |
Overexpression of Protective Antigen as a Novel Approach To Enhance Vaccine Efficacy of Brucella abortusStrain RB51 R Vemulapalli, Y He, S Cravero, N Sriranganathan, SM Boyle, ... Infection and immunity 68 (6), 3286-3289, 2000 | 119 | 2000 |