| Persistence of DNA in carcasses, slime and avian feces may affect interpretation of environmental DNA data CM Merkes, SG McCalla, NR Jensen, MP Gaikowski, JJ Amberg PLoS One 9 (11), e113346, 2014 | 196 | 2014 |
| Detecting the movement and spawning activity of bigheaded carps with environmental DNA RA Erickson, CB Rees, AA Coulter, CM Merkes, SG McCalla, ... Molecular Ecology Resources 16 (4), 957-965, 2016 | 116 | 2016 |
| Improving efficiency and reliability of environmental DNA analysis for silver carp JJ Amberg, SG McCalla, E Monroe, R Lance, K Baerwaldt, MP Gaikowski Journal of Great Lakes Research 41 (2), 367-373, 2015 | 66 | 2015 |
| Evidence of Asian carp spawning upstream of a key choke point in the Mississippi River JH Larson, BC Knights, SG McCalla, E Monroe, M Tuttle‐Lau, ... North American Journal of Fisheries Management 37 (4), 903-919, 2017 | 54 | 2017 |
| Defining reprogramming checkpoints from single-cell analyses of induced pluripotency KA Tran, SJ Pietrzak, NZ Zaidan, AF Siahpirani, SG McCalla, AS Zhou, ... Cell reports 27 (6), 1726-1741. e5, 2019 | 53 | 2019 |
| Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets S Zhang, S Pyne, S Pietrzak, S Halberg, SG McCalla, AF Siahpirani, ... Nature Communications 14 (1), 3064, 2023 | 34 | 2023 |
| Ethanol and sodium acetate as a preservation method to delay degradation of environmental DNA BA Ladell, LR Walleser, SG McCalla, RA Erickson, JJ Amberg Conservation Genetics Resources 11, 83-88, 2019 | 30 | 2019 |
| Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq data SG McCalla, A Fotuhi Siahpirani, J Li, S Pyne, M Stone, V Periyasamy, ... G3: Genes, Genomes, Genetics 13 (3), jkad004, 2023 | 19 | 2023 |
| Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor RA Erickson, MN Fienen, SG McCalla, EL Weiser, ML Bower, ... PLoS computational biology 14 (10), e1006468, 2018 | 19 | 2018 |
| Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patterns NR Iyer, J Shin, S Cuskey, Y Tian, NR Nicol, TE Doersch, F Seipel, ... Science advances 8 (39), eabn7430, 2022 | 12 | 2022 |
| Identifying strengths and weaknesses of methods for computational network inference from single cell RNA-seq data M Stone, J Li, SG McCalla, AF Siahpirani, V Periyasamy, J Shin, S Roy BioRxiv, 2021.06. 01.446671, 2021 | 12 | 2021 |
| Detection of environmental DNA of Bigheaded Carps in samples collected from selected locations in the St. Croix River and in the Mississippi River JJ Amberg, SG McCalla, L Miller, P Sorensen, MP Gaikowski Open-File Report, 2013 | 9 | 2013 |
| Identifying Strengths and Weaknesses of Methods for Computational Network Inference from Single-Cell RNA-Seq Data. G3: Genes, Genomes SG McCalla, A Fotuhi Siahpirani, J Li, S Pyne, M Stone, V Periyasamy, ... Genetics 13 (3), 2023 | 5 | 2023 |
| The complete mitochondrial genome of Hine’s emerald dragonfly (Somatochlora hineana Williamson) via NGS sequencing C Jackson, SG McCalla, J Amberg, D Soluk, H Britten Mitochondrial DNA Part B 3 (2), 562-563, 2018 | 3 | 2018 |
| Community for Data Integration 2016 annual report ML Langseth, L Hsu, J Amberg, N Bliss, AR Bock, RT Bolus, RS Bristol, ... Open-File Report, 2017 | 3 | 2017 |
| Modular derivation and unbiased single-cell analysis of regional human hindbrain and spinal neurons enables discovery of nuanced transcriptomic patterns along developmental axes NR Iyer, J Shin, S Cuskey, Y Tian, NR Nicol, TE Doersch, SG McCalla, ... BioRxiv, 2021.10. 14.464440, 2021 | 1 | 2021 |
| Patterns of genetic diversity in Diporeia in the Laurentian Great Lakes SG McCalla Purdue University, 2010 | 1 | 2010 |
| Profiling Cell Type Specificity and Adverse Events of Genome Editing Nucleases in the Brain and Retina Using Single Cell Transcriptomics K Saha, K Gimse, J Shin, Y Wang, JM Metzger, K Mueller, E Capowski, ... ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 63, 63-63, 2022 | | 2022 |
