| Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme EJ Hayden, E Ferrada, A Wagner Nature 474 (7349), 92-95, 2011 | 271 | 2011 |
| StAR: a simple tool for the statistical comparison of ROC curves IA Vergara, T Norambuena, E Ferrada, AW Slater, F Melo BMC bioinformatics 9, 1-5, 2008 | 213 | 2008 |
| Growth temperature and genome size in bacteria are negatively correlated, suggesting genomic streamlining during thermal adaptation N Sabath, E Ferrada, A Barve, A Wagner Genome biology and evolution 5 (5), 966-977, 2013 | 158 | 2013 |
| Stoichiometry and conditional stability constants of Cu (II) or Zn (II) clioquinol complexes; implications for Alzheimer's and Huntington's disease therapy E Ferrada, V Arancibia, B Loeb, E Norambuena, C Olea-Azar, ... Neurotoxicology 28 (3), 445-449, 2007 | 101 | 2007 |
| Protein robustness promotes evolutionary innovations on large evolutionary time-scales E Ferrada, A Wagner Proceedings of the Royal Society B: Biological Sciences 275 (1643), 1595-1602, 2008 | 90 | 2008 |
| Evolutionary innovations and the organization of protein functions in genotype space E Ferrada, A Wagner PLoS One 5 (11), e14172, 2010 | 61 | 2010 |
| A comparison of genotype-phenotype maps for RNA and proteins E Ferrada, A Wagner Biophysical journal 102 (8), 1916-1925, 2012 | 48 | 2012 |
| A structure and evolutionary-based classification of solute carriers E Ferrada, G Superti-Furga Iscience 25 (10), 2022 | 24 | 2022 |
| Effective knowledge‐based potentials E Ferrada, F Melo Protein Science 18 (7), 1469-1485, 2009 | 22 | 2009 |
| A knowledge-based potential with an accurate description of local interactions improves discrimination between native and near-native protein conformations E Ferrada, IA Vergara, F Melo Cell biochemistry and biophysics 49, 111-124, 2007 | 16 | 2007 |
| Nonbonded terms extrapolated from nonlocal knowledge‐based energy functions improve error detection in near‐native protein structure models E Ferrada, F Melo Protein Science 16 (7), 1410-1421, 2007 | 14 | 2007 |
| Discovery of molecular glue degraders via isogenic morphological profiling A Ng, F Offensperger, JA Cisneros, NS Scholes, M Malik, L Villanti, ... ACS Chemical Biology 18 (12), 2464-2473, 2023 | 13 | 2023 |
| The effects of stabilizing and directional selection on phenotypic and genotypic variation in a population of RNA enzymes EJ Hayden, S Bratulic, I Koenig, E Ferrada, A Wagner Journal of molecular evolution 78, 101-108, 2014 | 13 | 2014 |
| Functional characterization of SLC39 family members ZIP5 and ZIP10 in overexpressing HEK293 cells reveals selective copper transport activity M Polesel, A Ingles-Prieto, E Christodoulaki, E Ferrada, C Doucerain, ... Biometals 36 (1), 227-237, 2023 | 11 | 2023 |
| Environmental fluctuations and their consequences for the evolution of phenotypic diversity MA Fuentes, E Ferrada Frontiers in Physics 5, 16, 2017 | 11 | 2017 |
| The amino acid alphabet and the architecture of the protein sequence-structure map. I. Binary alphabets E Ferrada PLOS Computational Biology 10 (12), e1003946, 2014 | 11 | 2014 |
| Large-scale chemoproteomics expedites ligand discovery and predicts ligand behavior in cells F Offensperger, G Tin, M Duran-Frigola, E Hahn, S Dobner, CW Ende, ... Science 384 (6694), eadk5864, 2024 | 8 | 2024 |
| Computational Characterization of the mtORF of Pocilloporid Corals: Insights into Protein Structure and Function in Stylophora Lineages from Contrasting … E Banguera-Hinestroza, E Ferrada, Y Sawall, JF Flot Genes 10 (5), 324, 2019 | 7 | 2019 |
| Early emergence of negative regulation of the tyrosine kinase Src by the C-terminal Src kinase B Taskinen, E Ferrada, DM Fowler Journal of Biological Chemistry 292 (45), 18518-18529, 2017 | 6 | 2017 |
| The site-specific amino acid preferences of homologous proteins depend on sequence divergence E Ferrada Genome Biology and Evolution 11 (1), 121-135, 2019 | 5 | 2019 |
