| L-GIREMI uncovers RNA editing sites in long-read RNA-seq Z Liu, G Quinones-Valdez, T Fu, E Huang, M Choudhury, F Reese, ... Genome Biology 24 (1), 171, 2023 | 17 | 2023 |
| Widespread RNA hypoediting in schizophrenia and its relevance to mitochondrial function M Choudhury, T Fu, K Amoah, HI Jun, TW Chan, S Park, DW Walker, ... Science advances 9 (14), eade9997, 2023 | 13 | 2023 |
| Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in a panel of inbred and recombinant inbred mice AH Khan, JR Bagley, N LaPierre, C Gonzalez-Figueroa, TC Spencer, ... Cell reports 42 (8), 2023 | 4 | 2023 |
| LINE-associated cryptic splicing induces dsRNA-mediated interferon response and tumor immunity R Zheng, M Dunlap, J Lyu, C Gonzalez-Figueroa, G Bobkov, SE Harvey, ... bioRxiv, 2023.02. 23.529804, 2023 | 4 | 2023 |
| Identifying cell type-specific transcription factors by integrating ChIP-seq and eQTL data-application to monocyte gene regulation M Choudhury, SA Ramsey Gene regulation and systems biology 10, GRSB. S40768, 2016 | 4 | 2016 |
| hnRNPM protects against the dsRNA-mediated interferon response by repressing LINE-associated cryptic splicing R Zheng, M Dunlap, GOM Bobkov, C Gonzalez-Figueroa, KJ Patel, J Lyu, ... Molecular Cell, 2024 | 3 | 2024 |
| dsRID: in silico identification of dsRNA regions using long-read RNA-seq data R Yamamoto, Z Liu, M Choudhury, X Xiao Bioinformatics 39 (11), btad649, 2023 | 3 | 2023 |
| Splicing-specific transcriptome-wide association uncovers genetic mechanisms for schizophrenia JL Hervoso, K Amoah, J Dodson, M Choudhury, A Bhattacharya, ... The American Journal of Human Genetics 111 (8), 1573-1587, 2024 | 2 | 2024 |
| ecPath detects ecDNA in tumors from histopathology images M Choudhury, L Liu, A Yadav, OS Chapman, Z Ahmadi, R Younis, ... bioRxiv, 2024.11. 13.623494, 2024 | | 2024 |
| dsRID: Editing-free in silico identification of dsRNA region using long-read RNA-seq data R Yamamoto, Z Liu, M Choudhury, X Xiao bioRxiv, 2023.06. 02.543466, 2023 | | 2023 |
| Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in inbred and recombinant inbred mice AH Khan, JR Bagley, N LaPierre, C Gonzalez-Figueroa, TC Spencer, ... bioRxiv, 2022.11. 10.516062, 2022 | | 2022 |
| Computational Analysis of RNA Editing in Brain Diseases M Choudhury | | 2022 |
| THE DISTRIBUTION OF AMINO ACID CHANGES FROM CODING VARIANTS IS ALTERED IN SCHIZOPHRENIA LO Loohuis, M Choudhury, R Ophoff European Neuropsychopharmacology 29, S941-S942, 2019 | | 2019 |
| The Development and Application of a Systems Biology Approach to Mapping Monocyte Gene Regulatory Networks M Choudhury | | 2016 |
