Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum SC Bendall, EF Simonds, P Qiu, ED Amir, PO Krutzik, R Finck, ... Science 332 (6030), 687-696, 2011 | 2434 | 2011 |
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE P Qiu, EF Simonds, SC Bendall, KD Gibbs Jr, RV Bruggner, ... Nature Biotechnology, 2011 | 1048 | 2011 |
A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202, 2014 | 771 | 2014 |
Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ... Nature Methods, 2013 | 669 | 2013 |
Data-analysis strategies for image-based cell profiling. JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu, C Molnar, ... Nature methods 14 (9), 849, 2017 | 641 | 2017 |
COSMID: a web-based tool for identifying and validating CRISPR/Cas off-target sites TJ Cradick, P Qiu, CM Lee, EJ Fine, G Bao Molecular Therapy-Nucleic Acids 3, 2014 | 396 | 2014 |
TCGA-assembler: open-source software for retrieving and processing TCGA data Y Zhu, P Qiu, Y Ji Nature methods 11 (6), 599-600, 2014 | 394 | 2014 |
A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nature biotechnology 32 (12), 1213, 2014 | 322 | 2014 |
Embracing the dropouts in single-cell RNA-seq analysis P Qiu Nature communications 11 (1), 1169, 2020 | 316 | 2020 |
Aging progression of human gut microbiota C Xu, H Zhu, P Qiu BMC microbiology 19, 1-10, 2019 | 202 | 2019 |
Spanning-tree progression analysis of density-normalized events (SPADE) QIU Peng, AJ Gentles, SK Plevritis, G Nolan, K Sachs US Patent 10,289,802, 2019 | 177* | 2019 |
Novel BET protein proteolysis-targeting chimera exerts superior lethal activity than bromodomain inhibitor (BETi) against post-myeloproliferative neoplasm secondary (s) AML cells DT Saenz, W Fiskus, Y Qian, T Manshouri, K Rajapakshe, K Raina, ... Leukemia, 2017 | 175 | 2017 |
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ... Nature immunology 18 (12), 1274-1278, 2017 | 167 | 2017 |
Correlation Patterns Between DNA Methylation and Gene Expression in The Cancer Genome Atlas JCG Spainhour, HS Lim, SV Yi, P Qiu Cancer Informatics 18, 1176935119828776, 2019 | 164 | 2019 |
PSGL-1/Selectin and ICAM-1/CD18 interactions are involved in macrophage-induced drug resistance in myeloma Y Zheng, J Yang, J Qian, P Qiu, S Hanabuchi, Y Lu, Z Wang, Z Liu, H Li, ... Leukemia, 2012 | 156 | 2012 |
Model Reduction by Manifold Boundaries MK Transtrum, P Qiu Physical Review Letters 113 (9), 098701, 2014 | 142 | 2014 |
Visualization and cellular hierarchy inference of single-cell data using SPADE B Anchang, TDP Hart, SC Bendall, P Qiu, Z Bjornson, M Linderman, ... Nature protocols 11 (7), 1264-1279, 2016 | 117 | 2016 |
Individual Motile CD4+ T Cells Can Participate in Efficient Multikilling through Conjugation to Multiple Tumor Cells I Liadi, H Singh, G Romain, N Rey-Villamizar, A Merouane, ... Cancer immunology research 3 (5), 473-482, 2015 | 107 | 2015 |
Single‐cell mass cytometry reveals intracellular survival/proliferative signaling in FLT3‐ITD‐mutated AML stem/progenitor cells L Han, P Qiu, Z Zeng, JL Jorgensen, DH Mak, JK Burks, W Schober, ... Cytometry Part A 87 (4), 346-356, 2015 | 100 | 2015 |
AD Amir el, PO Krutzik, R SC Bendall, EF Simonds, P Qiu Finck, RV Bruggner, R. Melamed, A. Trejo, OI Ornatsky, RS Balderas, SK …, 2011 | 100 | 2011 |